PDB entry 4wss

View 4wss on RCSB PDB site
Description: The crystal structure of hemagglutinin form A/chicken/New York/14677-13/1998 in complex with LSTa
Class: viral protein
Keywords: influenza virus, hemagglutinin, H6, VIRAL PROTEIN
Deposited on 2014-10-28, released 2015-02-25
The last revision prior to the SCOPe 2.05 freeze date was dated 2015-02-25, with a file datestamp of 2015-02-20.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.221
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/chicken/New York/14677-13/1998(H6N2)) [TaxId:402503]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0A3A5 (4-End)
      • conflict (320)
      • conflict (502)
    Domains in SCOPe 2.05: d4wssa1, d4wssa2
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/chicken/New York/14677-13/1998(H6N2)) [TaxId:402503]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0A3A5 (4-End)
      • conflict (320)
    Domains in SCOPe 2.05: d4wssb1, d4wssb2
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/chicken/New York/14677-13/1998(H6N2)) [TaxId:402503]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0A3A5 (4-End)
      • conflict (320)
    Domains in SCOPe 2.05: d4wssc1, d4wssc2
  • Chain 'D':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/chicken/New York/14677-13/1998(H6N2)) [TaxId:402503]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0A3A5 (4-End)
      • conflict (320)
    Domains in SCOPe 2.05: d4wssd1, d4wssd2
  • Chain 'E':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/chicken/New York/14677-13/1998(H6N2)) [TaxId:402503]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0A3A5 (4-End)
      • conflict (320)
    Domains in SCOPe 2.05: d4wsse1, d4wsse2
  • Chain 'F':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/chicken/New York/14677-13/1998(H6N2)) [TaxId:402503]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q0A3A5 (4-End)
      • conflict (320)
    Domains in SCOPe 2.05: d4wssf1, d4wssf2
  • Heterogens: NAG, SIA

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4wssA (A:)
adpgdkicigyhannsttqvdtileknvtvthsvelletqkesrfcrvlnkapldlgdct
tegwilgnprcdkllgdrswsyiverpdaqngicypgvlkeaeelkaligsidtiqrfem
fpkstwtgvdtnsgvtsactynggssfyrnllwiikirsdpyslikgtytntgsqsilyf
wgvhhppddveqanlyglgtryvrmgtesmnfakgpeiadrppangqrgridyywsvlkp
getlnvesngnliapwyaykftssrhkgaifrsdlpiencdavcqtltgaintnktfqnv
spiwigecpkyvkskslklatglrnvpqvktrglfgaiagfieggwtgmvdgwygyhhen
sqgsgyaadkestqkaidgitnkvnsiidkmntqfeavehefsnlekrisnlnkrmedgf
ldvwtynaellvllenertldmhdanvknlhekvksqlrdnakdlgngcfefwhkcdnec
insvkngtynypkyqeesrlnreeiksgrlvprg

    Sequence, based on observed residues (ATOM records): (download) 
    >4wssA (A:)
dkicigyhannsttqvdtileknvtvthsvelletqkesrfcrvlnkapldlgdcttegw
ilgnprcdkllgdrswsyiverpdaqngicypgvlkeaeelkaligsidtiqrfemfpks
twtgvdtnsgvtsactynggssfyrnllwiikirsdpyslikgtytntgsqsilyfwgvh
hppddveqanlyglgtryvrmgtesmnfakgpeiadrppangqrgridyywsvlkpgetl
nvesngnliapwyaykftssrhkgaifrsdlpiencdavcqtltgaintnktfqnvspiw
igecpkyvkskslklatglrnvpqiagfieggwtgmvdgwygyhhensqgsgyaadkest
qkaidgitnkvnsiidkmntqfeavehefsnlekrisnlnkrmedgfldvwtynaellvl
lenertldmhdanvknlhekvksqlrdnakdlgngcfefwhkcdnecinsvkngtynypk
yqeesrlnre

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4wssB (B:)
adpgdkicigyhannsttqvdtileknvtvthsvelletqkesrfcrvlnkapldlgdct
tegwilgnprcdkllgdrswsyiverpdaqngicypgvlkeaeelkaligsidtiqrfem
fpkstwtgvdtnsgvtsactynggssfyrnllwiikirsdpyslikgtytntgsqsilyf
wgvhhppddveqanlyglgtryvrmgtesmnfakgpeiadrppangqrgridyywsvlkp
getlnvesngnliapwyaykftssrhkgaifrsdlpiencdavcqtltgaintnktfqnv
spiwigecpkyvkskslklatglrnvpqvktrglfgaiagfieggwtgmvdgwygyhhen
sqgsgyaadkestqkaidgitnkvnsiidkmntqfeavehefsnlekrisnlnkrmedgf
ldvwtynaellvllenertldmhdanvknlhekvksqlrdnakdlgngcfefwhkcdnec
insvkngtynypkyqeesrlnreeiksgrlvprg

    Sequence, based on observed residues (ATOM records): (download) 
    >4wssB (B:)
dkicigyhannsttqvdtileknvtvthsvelletqkesrfcrvlnkapldlgdcttegw
ilgnprcdkllgdrswsyiverpdaqngicypgvlkeaeelkaligsidtiqrfemfpks
twtgvdtnsgvtsactynggssfyrnllwiikirsdpyslikgtytntgsqsilyfwgvh
hppddveqanlyglgtryvrmgtesmnfakgpeiadrppangqrgridyywsvlkpgetl
nvesngnliapwyaykftssrhkgaifrsdlpiencdavcqtltgaintnktfqnvspiw
igecpkyvkskslklatglrnvpggwtgmvdgwygyhhensqgsgyaadkestqkaidgi
tnkvnsiidkmntqfeavehefsnlekrisnlnkrmedgfldvwtynaellvllenertl
dmhdanvknlhekvksqlrdnakdlgngcfefwhkcdnecinsvkngtynypkyqeesrl
n

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4wssC (C:)
adpgdkicigyhannsttqvdtileknvtvthsvelletqkesrfcrvlnkapldlgdct
tegwilgnprcdkllgdrswsyiverpdaqngicypgvlkeaeelkaligsidtiqrfem
fpkstwtgvdtnsgvtsactynggssfyrnllwiikirsdpyslikgtytntgsqsilyf
wgvhhppddveqanlyglgtryvrmgtesmnfakgpeiadrppangqrgridyywsvlkp
getlnvesngnliapwyaykftssrhkgaifrsdlpiencdavcqtltgaintnktfqnv
spiwigecpkyvkskslklatglrnvpqvktrglfgaiagfieggwtgmvdgwygyhhen
sqgsgyaadkestqkaidgitnkvnsiidkmntqfeavehefsnlekrisnlnkrmedgf
ldvwtynaellvllenertldmhdanvknlhekvksqlrdnakdlgngcfefwhkcdnec
insvkngtynypkyqeesrlnreeiksgrlvprg

    Sequence, based on observed residues (ATOM records): (download) 
    >4wssC (C:)
dkicigyhannsttqvdtileknvtvthsvelletqkesrfcrvlnkapldlgdcttegw
ilgnprcdkllgdrswsyiverpdaqngicypgvlkeaeelkaligsidtiqrfemfpks
twtgvdtnsgvtsactynggssfyrnllwiikirsdpyslikgtytntgsqsilyfwgvh
hppddveqanlyglgtryvrmgtesmnfakgpeiadrppangqrgridyywsvlkpgetl
nvesngnliapwyaykftssrhkgaifrsdlpiencdavcqtltgaintnktfqnvspiw
igecpkyvkskslklatglrnvpggwtgmvdgwygyhhensqgsgyaadkestqkaidgi
tnkvnsiidkmntqfeavehefsnlekrisnlnkrmedgfldvwtynaellvllenertl
dmhdanvknlhekvksqlrdnakdlgngcfefwhkcdnecinsvkngtynypkyqeesrl
nr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4wssD (D:)
adpgdkicigyhannsttqvdtileknvtvthsvelletqkesrfcrvlnkapldlgdct
tegwilgnprcdkllgdrswsyiverpdaqngicypgvlkeaeelkaligsidtiqrfem
fpkstwtgvdtnsgvtsactynggssfyrnllwiikirsdpyslikgtytntgsqsilyf
wgvhhppddveqanlyglgtryvrmgtesmnfakgpeiadrppangqrgridyywsvlkp
getlnvesngnliapwyaykftssrhkgaifrsdlpiencdavcqtltgaintnktfqnv
spiwigecpkyvkskslklatglrnvpqvktrglfgaiagfieggwtgmvdgwygyhhen
sqgsgyaadkestqkaidgitnkvnsiidkmntqfeavehefsnlekrisnlnkrmedgf
ldvwtynaellvllenertldmhdanvknlhekvksqlrdnakdlgngcfefwhkcdnec
insvkngtynypkyqeesrlnreeiksgrlvprg

    Sequence, based on observed residues (ATOM records): (download) 
    >4wssD (D:)
dkicigyhannsttqvdtileknvtvthsvelletqkesrfcrvlnkapldlgdcttegw
ilgnprcdkllgdrswsyiverpdaqngicypgvlkeaeelkaligsidtiqrfemfpks
twtgvdtnsgvtsactynggssfyrnllwiikirsdpyslikgtytntgsqsilyfwgvh
hppddveqanlyglgtryvrmgtesmnfakgpeiadrppangqrgridyywsvlkpgetl
nvesngnliapwyaykftssrhkgaifrsdlpiencdavcqtltgaintnktfqnvspiw
igecpkyvkskslklatglrnvpglfgaiagfieggwtgmvdgwygyhhensqgsgyaad
kestqkaidgitnkvnsiidkmntqfeavehefsnlekrisnlnkrmedgfldvwtynae
llvllenertldmhdanvknlhekvksqlrdnakdlgngcfefwhkcdnecinsvkngty
nypkyqeesrlnr

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4wssE (E:)
adpgdkicigyhannsttqvdtileknvtvthsvelletqkesrfcrvlnkapldlgdct
tegwilgnprcdkllgdrswsyiverpdaqngicypgvlkeaeelkaligsidtiqrfem
fpkstwtgvdtnsgvtsactynggssfyrnllwiikirsdpyslikgtytntgsqsilyf
wgvhhppddveqanlyglgtryvrmgtesmnfakgpeiadrppangqrgridyywsvlkp
getlnvesngnliapwyaykftssrhkgaifrsdlpiencdavcqtltgaintnktfqnv
spiwigecpkyvkskslklatglrnvpqvktrglfgaiagfieggwtgmvdgwygyhhen
sqgsgyaadkestqkaidgitnkvnsiidkmntqfeavehefsnlekrisnlnkrmedgf
ldvwtynaellvllenertldmhdanvknlhekvksqlrdnakdlgngcfefwhkcdnec
insvkngtynypkyqeesrlnreeiksgrlvprg

    Sequence, based on observed residues (ATOM records): (download) 
    >4wssE (E:)
dkicigyhannsttqvdtileknvtvthsvelletqkesrfcrvlnkapldlgdcttegw
ilgnprcdkllgdrswsyiverpdaqngicypgvlkeaeelkaligsidtiqrfemfpks
twtgvdtnsgvtsactynggssfyrnllwiikirsdpyslikgtytntgsqsilyfwgvh
hppddveqanlyglgtryvrmgtesmnfakgpeiadrppangqrgridyywsvlkpgetl
nvesngnliapwyaykftssrhkgaifrsdlpiencdavcqtltgaintnktfqnvspiw
igecpkyvkskslklatglrnvpqiagfieggwtgmvdgwygyhhensqgsgyaadkest
qkaidgitnkvnsiidkmntqfeavehefsnlekrisnlnkrmedgfldvwtynaellvl
lenertldmhdanvknlhekvksqlrdnakdlgngcfefwhkcdnecinsvkngtynypk
yqeesrlnr

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4wssF (F:)
adpgdkicigyhannsttqvdtileknvtvthsvelletqkesrfcrvlnkapldlgdct
tegwilgnprcdkllgdrswsyiverpdaqngicypgvlkeaeelkaligsidtiqrfem
fpkstwtgvdtnsgvtsactynggssfyrnllwiikirsdpyslikgtytntgsqsilyf
wgvhhppddveqanlyglgtryvrmgtesmnfakgpeiadrppangqrgridyywsvlkp
getlnvesngnliapwyaykftssrhkgaifrsdlpiencdavcqtltgaintnktfqnv
spiwigecpkyvkskslklatglrnvpqvktrglfgaiagfieggwtgmvdgwygyhhen
sqgsgyaadkestqkaidgitnkvnsiidkmntqfeavehefsnlekrisnlnkrmedgf
ldvwtynaellvllenertldmhdanvknlhekvksqlrdnakdlgngcfefwhkcdnec
insvkngtynypkyqeesrlnreeiksgrlvprg

    Sequence, based on observed residues (ATOM records): (download) 
    >4wssF (F:)
dkicigyhannsttqvdtileknvtvthsvelletqkesrfcrvlnkapldlgdcttegw
ilgnprcdkllgdrswsyiverpdaqngicypgvlkeaeelkaligsidtiqrfemfpks
twtgvdtnsgvtsactynggssfyrnllwiikirsdpyslikgtytntgsqsilyfwgvh
hppddveqanlyglgtryvrmgtesmnfakgpeiadrppangqrgridyywsvlkpgetl
nvesngnliapwyaykftssrhkgaifrsdlpiencdavcqtltgaintnktfqnvspiw
igecpkyvkskslklatglrggwtgmvdgwygyhhensqgsgyaadkestqkaidgitnk
vnsiidkmntqfeavehefsnlekrisnlnkrmedgfldvwtynaellvllenertldmh
danvknlhekvksqlrdnakdlgngcfefwhkcdnecinsvkngtynypkyqeesrlnr