PDB entry 4v3k

View 4v3k on RCSB PDB site
Description: RNF38-UbcH5B-UB complex
Class: ligase
Keywords: ring e3, e2, ubiquitin, ligase
Deposited on 2014-10-20, released 2015-04-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-31, with a file datestamp of 2019-07-26.
Experiment type: XRAY
Resolution: 2.04 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ubiquitin-conjugating enzyme e2 d2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62837 (0-145)
      • engineered mutation (20)
      • engineered mutation (83)
    Domains in SCOPe 2.08: d4v3ka_
  • Chain 'B':
    Compound: Polyubiquitin-C
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (5-80)
      • expression tag (4)
    Domains in SCOPe 2.08: d4v3kb1, d4v3kb2
  • Chain 'C':
    Compound: e3 ubiquitin-protein ligase rnf38
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: ubiquitin-conjugating enzyme e2 d2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62837 (0-145)
      • engineered mutation (20)
      • engineered mutation (83)
    Domains in SCOPe 2.08: d4v3kd_
  • Chain 'E':
    Compound: Polyubiquitin-C
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (5-80)
      • expression tag (4)
    Domains in SCOPe 2.08: d4v3ke1, d4v3ke2
  • Chain 'F':
    Compound: e3 ubiquitin-protein ligase rnf38
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CL, EDO, ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4v3kA (A:)
alkrihkelndlardppaqcragpvgddmfhwqatimgpndspyqggvffltihfptdyp
fkppkvafttriyhpninsngsikldilrsqwspaltiskvllsicsllcdpnpddplvp
eiariyktdrekynriarewtqkyam

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4v3kB (B:)
gsggsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrt
lsdyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >4v3kB (B:)
smqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
niqkestlhlvlrlrgg

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4v3kD (D:)
alkrihkelndlardppaqcragpvgddmfhwqatimgpndspyqggvffltihfptdyp
fkppkvafttriyhpninsngsikldilrsqwspaltiskvllsicsllcdpnpddplvp
eiariyktdrekynriarewtqkyam

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4v3kE (E:)
gsggsmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrt
lsdyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >4v3kE (E:)
smqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
niqkestlhlvlrlrgg

  • Chain 'F':
    No sequence available.