SCOPe 2.08: Structural Classification of Proteins

PDB entry 4v1a

View 4v1a on RCSB PDB site
Description: Structure of the large subunit of the mammalian mitoribosome, part 2 of 2
Class: ribosome
Keywords: ribosome, translation, large ribosomal subunit, mitoribosome, mammalian mitochondrial ribosome, cryo-em
Deposited on 2014-09-25, released 2014-10-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-10-02, with a file datestamp of 2019-09-27.
Experiment type: EM
Resolution: 3.4 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

Chain 'a':
Compound: mitoribosomal protein ml37, mrpl37
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- PDB 4V1A
Domains in SCOPe 2.08: d4v1aa_
Chain 'b':
Compound: mitoribosomal protein ml38, mrpl38
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- Uniprot F1RW03 (Start-379)
Domains in SCOPe 2.08: d4v1ab_
Chain 'c':
Compound: mitoribosomal protein ml39, mrpl39
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- PDB 4V1A
Domains in SCOPe 2.08: d4v1ac_
Chain 'd':
Compound: mitoribosomal protein ml40, mrpl40
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- Uniprot F1RK59
Domains in SCOPe 2.08: d4v1ad_
Chain 'e':
Compound: mitoribosomal protein ml41, mrpl41
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- PDB 4V1A (Start-134)
Domains in SCOPe 2.08: d4v1ae_
Chain 'f':
Compound: mitoribosomal protein ml42, mrpl42
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- PDB 4V1A (Start-141)
Domains in SCOPe 2.08: d4v1af_
Chain 'g':
Compound: mitoribosomal protein ml43, mrpl43
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- Uniprot F1S8U4
Domains in SCOPe 2.08: d4v1ag_
Chain 'h':
Compound: mitoribosomal protein ml44, mrpl44
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- Uniprot F1SR64
Domains in SCOPe 2.08: d4v1ah_
Chain 'i':
Compound: mitoribosomal protein ml45, mrpl45
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- PDB 4V1A
Domains in SCOPe 2.08: d4v1ai_
Chain 'j':
Compound: mitoribosomal protein ml46, mrpl46
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- Uniprot F1SRT0 (Start-278)
Domains in SCOPe 2.08: d4v1aj_
Chain 'k':
Compound: mitoribosomal protein ml48, mrpl48
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- PDB 4V1A
Domains in SCOPe 2.08: d4v1ak_
Chain 'l':
Compound: mitoribosomal protein ml49, mrpl49
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- PDB 4V1A (Start-165)
Domains in SCOPe 2.08: d4v1al_
Chain 'm':
Compound: mitoribosomal protein ml50, mrpl50
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- Uniprot I3L9H6 (Start-158)
Domains in SCOPe 2.08: d4v1am_
Chain 'n':
Compound: mitoribosomal protein ml51, mrpl51
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- PDB 4V1A (Start-127)
Domains in SCOPe 2.08: d4v1an_
Chain 'o':
Compound: mitoribosomal protein ml52, mrpl52
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- Uniprot F1S9B7
Domains in SCOPe 2.08: d4v1ao_
Chain 'p':
Compound: mitoribosomal protein ml53, mrpl53
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- Uniprot F1SLH8
Domains in SCOPe 2.08: d4v1ap_
Chain 'q':
Compound: mitoribosomal protein ml54, mrpl54
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- PDB 4V1A (Start-137)
Domains in SCOPe 2.08: d4v1aq_
Chain 't':
Compound: mitoribosomal protein ml63, mrpl57, mrp63
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- PDB 4V1A (Start-101)
Domains in SCOPe 2.08: d4v1at_
Chain 'u':
Compound: mitoribosomal protein ml62, mrpl58, ict1
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- Uniprot W5IDC0 (173-End)
- PDB 4V1A (163-172)
Domains in SCOPe 2.08: d4v1au_
Chain 'v':
Compound: mitoribosomal protein ml64, mrpl59, crif1
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- Uniprot F1SD95 (Start-142)
- PDB 4V1A (143-154)
- PDB 4V1A95_PIG
Domains in SCOPe 2.08: d4v1av_
Chain 'w':
Compound: mitoribosomal protein ml65, mrps30
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- PDB 4V1A
Domains in SCOPe 2.08: d4v1aw_
Chain 'x':
Compound: mitoribosomal protein ml66, mrps18a
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- Uniprot F1RRH6 (Start-195)
Domains in SCOPe 2.08: d4v1ax_
Chain 'z':
Compound: unassigned secondary structure elements
Species: Sus scrofa [TaxId:9823]
Database cross-references and differences (RAF-indexed):
- PDB 4V1A (0-46)
Domains in SCOPe 2.08: d4v1az_
Heterogens: ZN

PDB Chain Sequences:

Chain 'a':
Sequence, based on SEQRES records: (download)

>4v1aa (a:)
malasgparralarpgrlgfggcgaprrgayewgvrstrkpepppldrvyeipglepity
agkmhfmpglarpvfppwdpgwthpkfrrlpplhehplykdqacyvfhqrcrllegvkqa
lwltktqlieglpekvlrladdprnhienqdervlnaisharlwhstedipkretycpvi
vdsliqlcksqilkhpslarricaqnntlsatwnresillqvhgssgarlnakdplppva
sqeeveatknhvletfypisptmglqecnvydvnddtgfqegypypcphtlyflesanlr
prrfqpdqlrakmilfafgsalaqarllygndskvleqpvvvqsvgtdgrlfqflvlqln
ttdlasdegvknlawvdsdqllyqhfwclpvikkkvvvepvgpigfqpetfrkflalylh
gav