PDB entry 4ubp

View 4ubp on RCSB PDB site
Description: structure of bacillus pasteurii urease inhibited with acetohydroxamic acid at 1.55 a resolution
Class: hydrolase
Keywords: urease, bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase
Deposited on 1999-02-25, released 2000-03-06
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.55 Å
R-factor: 0.151
AEROSPACI score: 0.64 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (urease (chain a))
    Species: Sporosarcina pasteurii [TaxId:1474]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4ubpa_
  • Chain 'B':
    Compound: protein (urease (chain b))
    Species: Sporosarcina pasteurii [TaxId:1474]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4ubpb_
  • Chain 'C':
    Compound: protein (urease (chain c))
    Species: Sporosarcina pasteurii [TaxId:1474]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P41020 (0-569)
      • variant (18)
      • variant (27)
      • insertion (28)
      • variant (35-37)
      • modified residue (219)
      • variant (262)
      • variant (419)
    Domains in SCOPe 2.05: d4ubpc1, d4ubpc2
  • Heterogens: NI, HAE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4ubpA (A:)
mhlnpaekeklqiflaselllrrkarglklnypeavaiitsfimegardgktvamlmeeg
khvltrddvmegvpemiddiqaeatfpdgtklvtvhnpis

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ubpB (B:)
msnnnyivpgeyrvaegeieinagrekttirvsntgdrpiqvgshihfvevnkellfdra
egigrrlnipsgtaarfepgeemeveltelggnrevfgisdltngsvdnkelilqrakel
gykgve

    Sequence, based on observed residues (ATOM records): (download) 
    >4ubpB (B:)
nyivpgeyrvaegeieinagrekttirvsntgdrpiqvgshihfvevnkellfdraegig
rrlnipsgtaarfepgeemeveltelggnrevfgisdltngsvdnkelilqrakelgykg
ve

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4ubpC (C:)
mkinrqqyaesygptvgdevrladtdlwievekdyttygdevnfgggkvlregmgengty
trtenvldllltnalildytgiykadigvkdgyivgigkggnpdimdgvtpnmivgtate
viaaegkivtaggidthvhfinpdqvdvalangittlfgggtgpaegskattvtpgpwni
ekmlksteglpinvgilgkghgssiapimeqidagaaglkihedwgatpasidrsltvad
eadvqvaihsdtlneagfledtlraingrvihsfhvegaggghapdimamaghpnvlpss
tnptrpftvntidehldmlmvchhlkqnipedvafadsrirpetiaaedilhdlgiismm
stdalamgragemvlrtwqtadkmkkqrgplaeekngsdnfrlkryvskytinpaiaqgi
ahevgsieegkfadlvlwepkffgvkadrvikggiiayaqigdpsasiptpqpvmgrrmy
gtvgdlihdtnitfmskssiqqgvpaklglkrrigtvkncrnigkkdmkwndvttdidin
petyevkvdgevltcepvkelpmaqryflf