PDB entry 4u61

View 4u61 on RCSB PDB site
Description: Trichodysplasia spinulosa-associated polyomavirus (TSPyV) VP1 in complex with 6'-sialyllactose
Class: viral protein
Keywords: viral coat protein, jelly-roll fold, glycan binding, viral protein
Deposited on 2014-07-26, released 2015-08-05
The last revision prior to the SCOPe 2.07 freeze date was dated 2015-09-02, with a file datestamp of 2015-08-28.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: N/A
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4u61a_
  • Chain 'B':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4u61b_
  • Chain 'C':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4u61c_
  • Chain 'D':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4u61d_
  • Chain 'E':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4u61e_
  • Chain 'F':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4u61f_
  • Chain 'G':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4u61g_
  • Chain 'H':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4u61h_
  • Chain 'I':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4u61i_
  • Chain 'J':
    Compound: Structural protein VP1
    Species: Trichodysplasia spinulosa-associated polyomavirus [TaxId:862909]
    Gene: VP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4u61j_
  • Heterogens: GAL, SIA, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4u61A (A:)
    gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
    tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
    igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
    tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
    glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4u61A (A:)
    ievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptys
    tarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmn
    fhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpve
    cwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdi
    vgflvgkdgdmqyrglpryfnillrkrtvrn
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4u61B (B:)
    gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
    tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
    igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
    tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
    glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4u61B (B:)
    ievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptys
    tarinlpmlntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmnfhmfav
    ggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpvecwcpdp
    sknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdivgflvg
    kdgdmqyrglpryfnillrkrtvr
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4u61C (C:)
    gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
    tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
    igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
    tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
    glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4u61C (C:)
    evlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptyst
    arinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmnf
    hmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpvec
    wcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdiv
    gflvgkdgdmqyrglpryfnillrkrtvrn
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4u61D (D:)
    gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
    tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
    igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
    tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
    glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4u61D (D:)
    ievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptys
    tarinlpmlntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmnfhmfav
    ggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpvecwcpdp
    sknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdivgflvg
    kdgdmqyrglpryfnillrkrtvr
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >4u61E (E:)
    gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
    tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
    igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
    tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
    glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4u61E (E:)
    nievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeipty
    starinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegm
    nfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpv
    ecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccd
    ivgflvgkdgdmqyrglpryfnillrkrtvrn
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >4u61F (F:)
    gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
    tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
    igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
    tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
    glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4u61F (F:)
    ievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptys
    tarinlpmlntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmnfhmfav
    ggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpvecwcpdp
    sknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdivgflvg
    kdgdmqyrglpryfnillrkrtvr
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >4u61G (G:)
    gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
    tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
    igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
    tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
    glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4u61G (G:)
    evlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptyst
    arinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmnf
    hmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpvec
    wcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdiv
    gflvgkdgdmqyrglpryfnillrkrtvrn
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >4u61H (H:)
    gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
    tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
    igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
    tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
    glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4u61H (H:)
    ievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptys
    tarinlpmlntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmnfhmfav
    ggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpvecwcpdp
    sknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdivgflvg
    kdgdmqyrglpryfnillrkrtvr
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >4u61I (I:)
    gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
    tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
    igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
    tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
    glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4u61I (I:)
    ievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeiptys
    tarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmn
    fhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpve
    cwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdi
    vgflvgkdgdmqyrglpryfnillrkrtvrn
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >4u61J (J:)
    gshmaskgnievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkp
    tsgeiptystarinlpmlnedltcntltmweavsvktevvgvsslvnvhmatkrmyddkg
    igfpvegmnfhmfavggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkl
    tkdgafpvecwcpdpsknentryygsytggqstppvlqftntvttvlldengvgplckgd
    glyvsccdivgflvgkdgdmqyrglpryfnillrkrtvrn
    

    Sequence, based on observed residues (ATOM records): (download)
    >4u61J (J:)
    nievlnlvtgpdsittielylntrmgqndeskdnygysekvtvanssdqdkptsgeipty
    starinlpmltltmweavsvktevvgvsslvnvhmatkrmyddkgigfpvegmnfhmfav
    ggeplelqfltgnyrtdysandklvvppikhqstqglnphykqkltkdgafpvecwcpdp
    sknentryygsytggqstppvlqftntvttvlldengvgplckgdglyvsccdivgflvg
    kdgdmqyrglpryfnillrkrtvr