PDB entry 4u4m
View 4u4m on RCSB PDB site
Description: Crystal structure of 0.5M urea unfolded YagE, a KDG aldolase protein in complex with Pyruvate
Class: sugar binding protein
Keywords: TIM barrel, NAL superfamily, KDGA, Schiff base, catalytic triad, Chemical denaturant, Urea promoted unfolding, SUGAR BINDING PROTEIN
Deposited on
2014-07-24, released
2015-07-29
The last revision prior to the SCOPe 2.08 freeze date was dated
2015-07-29, with a file datestamp of
2015-07-24.
Experiment type: XRAY
Resolution: 3.09 Å
R-factor: N/A
AEROSPACI score: 0.13
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: yage
Species: Escherichia coli K-12 [TaxId:83333]
Gene: YAGE
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4u4ma_ - Chain 'B':
Compound: yage
Species: Escherichia coli K-12 [TaxId:83333]
Gene: YAGE
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4u4mb_ - Chain 'C':
Compound: yage
Species: Escherichia coli K-12 [TaxId:83333]
Gene: YAGE
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4u4mc_ - Chain 'D':
Compound: yage
Species: Escherichia coli K-12 [TaxId:83333]
Gene: YAGE
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4u4md_ - Heterogens: URE, PYR, EDO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>4u4mA (A:)
alftgiippvstiftadgqldkpgtaaliddlikagvdglfflgsggefsqlgaeerkai
arfaidhvdrrvpvligtggtnaretielsqhaqqagadgivvinpyywkvseanliryf
eqvadsvtlpvmlynfpaltgqdltpalvktladsrsniigikdtidsvahlrsmihtvk
gahphftvlcgyddhlfntlllggdgaisasgnfapqvsvnllkawrdgdvakaagyhqt
llqipqmyqldtpfvnvikeaivlcgrpvsthvlppaspldeprkaqlktllqqlklc
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>4u4mB (B:)
alftgiippvstiftadgqldkpgtaaliddlikagvdglfflgsggefsqlgaeerkai
arfaidhvdrrvpvligtggtnaretielsqhaqqagadgivvinpyywkvseanliryf
eqvadsvtlpvmlynfpaltgqdltpalvktladsrsniigikdtidsvahlrsmihtvk
gahphftvlcgyddhlfntlllggdgaisasgnfapqvsvnllkawrdgdvakaagyhqt
llqipqmyqldtpfvnvikeaivlcgrpvsthvlppaspldeprkaqlktllqqlklc
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>4u4mC (C:)
alftgiippvstiftadgqldkpgtaaliddlikagvdglfflgsggefsqlgaeerkai
arfaidhvdrrvpvligtggtnaretielsqhaqqagadgivvinpyywkvseanliryf
eqvadsvtlpvmlynfpaltgqdltpalvktladsrsniigikdtidsvahlrsmihtvk
gahphftvlcgyddhlfntlllggdgaisasgnfapqvsvnllkawrdgdvakaagyhqt
llqipqmyqldtpfvnvikeaivlcgrpvsthvlppaspldeprkaqlktllqqlklc
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>4u4mD (D:)
alftgiippvstiftadgqldkpgtaaliddlikagvdglfflgsggefsqlgaeerkai
arfaidhvdrrvpvligtggtnaretielsqhaqqagadgivvinpyywkvseanliryf
eqvadsvtlpvmlynfpaltgqdltpalvktladsrsniigikdtidsvahlrsmihtvk
gahphftvlcgyddhlfntlllggdgaisasgnfapqvsvnllkawrdgdvakaagyhqt
llqipqmyqldtpfvnvikeaivlcgrpvsthvlppaspldeprkaqlktllqqlklc