PDB entry 4u2h

View 4u2h on RCSB PDB site
Description: The crystal structure of apo CalE6, a methionine gamma lyase from Micromonospora echinospora
Class: lyase
Keywords: Lyase
Deposited on 2014-07-17, released 2015-01-07
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-01-07, with a file datestamp of 2015-01-02.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: 0.209
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CalE6
    Species: Micromonospora echinospora [TaxId:1877]
    Gene: calE6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4u2ha_
  • Chain 'B':
    Compound: CalE6
    Species: Micromonospora echinospora [TaxId:1877]
    Gene: calE6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4u2hb_
  • Chain 'C':
    Compound: CalE6
    Species: Micromonospora echinospora [TaxId:1877]
    Gene: calE6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4u2hc_
  • Chain 'D':
    Compound: CalE6
    Species: Micromonospora echinospora [TaxId:1877]
    Gene: calE6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4u2hd_
  • Chain 'E':
    Compound: CalE6
    Species: Micromonospora echinospora [TaxId:1877]
    Gene: calE6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4u2he_
  • Chain 'F':
    Compound: CalE6
    Species: Micromonospora echinospora [TaxId:1877]
    Gene: calE6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4u2hf_
  • Chain 'G':
    Compound: CalE6
    Species: Micromonospora echinospora [TaxId:1877]
    Gene: calE6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4u2hg_
  • Chain 'H':
    Compound: CalE6
    Species: Micromonospora echinospora [TaxId:1877]
    Gene: calE6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4u2hh_
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4u2hA (A:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvrya
dlttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvl
qqplalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflv
rrglhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivs
fdylggpaerlldrftlftcgvslggvhslvecpalmthrplsaeararrgigeslirls
vgiedpqdlaedlsralaggtlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4u2hA (A:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstagtdglfdlaarqgvrvryadltt
pegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvlqqpl
algadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflvrrgl
htlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivsfdyl
ggpaerlldrftlftcgvslggvhslvecpalmtgeslirlsvgiedpqdlaedlsrala
gg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4u2hB (B:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvrya
dlttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvl
qqplalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflv
rrglhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivs
fdylggpaerlldrftlftcgvslggvhslvecpalmthrplsaeararrgigeslirls
vgiedpqdlaedlsralaggtlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4u2hB (B:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqpryfygrgenptreeleecla
glerapfatvfssgqaaaatllslvrpgqcvvstvyagtdglfdlaarqgvrvryadltt
pegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvlqqpl
algadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflvrrgl
htlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivsfdyl
ggpaerlldrftlftcgvslggvhslvecpalmthrgigeslirlsvgiedpqdlaedls
ralag

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4u2hC (C:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvrya
dlttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvl
qqplalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflv
rrglhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivs
fdylggpaerlldrftlftcgvslggvhslvecpalmthrplsaeararrgigeslirls
vgiedpqdlaedlsralaggtlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4u2hC (C:)
mrfdtrlvhggrrpsagtgdvvppihvsttyerraqpryfygrgenptreeleeclagle
rapfatvfssgqaaaatllslvrpgqcvvstgtdglfdlaarqgvrvryadlttpgiaaa
laepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvlqqplalgadvs
lysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflvrrglhtlslrv
hrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivsfdylggpaerl
ldrftlftcgvslggvhslvecpalmthrprgigeslirlsvgiedpqdlaedlsralag

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4u2hD (D:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvrya
dlttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvl
qqplalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflv
rrglhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivs
fdylggpaerlldrftlftcgvslggvhslvecpalmthrplsaeararrgigeslirls
vgiedpqdlaedlsralaggtlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4u2hD (D:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqpryfygrgenptreeleecla
glerapfatvfssgqaaaatllslvrpgqcvvstddyagtdglfdlaarqgvrvryadlt
tpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvlqqp
lalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflvrrg
lhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivsfdy
lggpaerlldrftlftcgvslggvhslvecpalmthrpgigeslirlsvgiedpqdlaed
lsrala

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4u2hE (E:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvrya
dlttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvl
qqplalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflv
rrglhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivs
fdylggpaerlldrftlftcgvslggvhslvecpalmthrplsaeararrgigeslirls
vgiedpqdlaedlsralaggtlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4u2hE (E:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvrya
dlttpgiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvlq
qplalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflvr
rglhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivsf
dylggpaerlldrftlftcgvslggvhslvecpalmthgigeslirlsvgiedpqdlaed
lsrala

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4u2hF (F:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvrya
dlttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvl
qqplalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflv
rrglhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivs
fdylggpaerlldrftlftcgvslggvhslvecpalmthrplsaeararrgigeslirls
vgiedpqdlaedlsralaggtlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4u2hF (F:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqpryfygrgenptreeleecla
glerapfatvfssgqaaaatllslvrpgqcvvstgtdglfdlaarqgvrvryadlttpeg
iaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvlqqplalg
advslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflvrrglhtl
slrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivsfdylggp
aerlldrftlftcgvslggvhslvecpalmthrrgigeslirlsvgiedpqdlaedlsra
la

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4u2hG (G:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvrya
dlttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvl
qqplalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflv
rrglhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivs
fdylggpaerlldrftlftcgvslggvhslvecpalmthrplsaeararrgigeslirls
vgiedpqdlaedlsralaggtlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4u2hG (G:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstdgtdglfdlaarqgvrvryadltt
pgiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvlqqpla
lgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflvrrglh
tlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivsfdylg
gpaerlldrftlftcgvslggvhslvecpalmtgeslirlsvgiedpqdlaedlsralag
g

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4u2hH (H:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvrya
dlttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvl
qqplalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflv
rrglhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivs
fdylggpaerlldrftlftcgvslggvhslvecpalmthrplsaeararrgigeslirls
vgiedpqdlaedlsralaggtlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4u2hH (H:)
msgmrfdtrlvhggrpsagtgdvvppihvsttyerraqpryfygrgenptreeleeclag
lerapfatvfssgqaaaatllslvrpgqcvvstglfdlaarqgvrvryadlttpegiaaa
laepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvlqqplalgadvs
lysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflvrrglhtlslrv
hrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivsfdylggpaerl
ldrftlftcgvslggvhslvecpalmthrpaearrgigeslirlsvgiedpqdlaedlsr
alag