PDB entry 4u1t

View 4u1t on RCSB PDB site
Description: The crystal structure of holo CalE6, a methionine gamma lyase from Micromonospora echinospora
Class: lyase
Keywords: Lyase
Deposited on 2014-07-16, released 2015-01-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2015-01-14, with a file datestamp of 2015-01-09.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.153
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CalE6
    Species: Micromonospora echinospora [TaxId:1877]
    Gene: calE6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4u1ta_
  • Chain 'B':
    Compound: CalE6
    Species: Micromonospora echinospora [TaxId:1877]
    Gene: calE6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4u1tb_
  • Chain 'C':
    Compound: CalE6
    Species: Micromonospora echinospora [TaxId:1877]
    Gene: calE6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4u1tc_
  • Chain 'D':
    Compound: CalE6
    Species: Micromonospora echinospora [TaxId:1877]
    Gene: calE6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4u1td_
  • Chain 'E':
    Compound: CalE6
    Species: Micromonospora echinospora [TaxId:1877]
    Gene: calE6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4u1te_
  • Chain 'F':
    Compound: CalE6
    Species: Micromonospora echinospora [TaxId:1877]
    Gene: calE6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4u1tf_
  • Chain 'G':
    Compound: CalE6
    Species: Micromonospora echinospora [TaxId:1877]
    Gene: calE6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4u1tg_
  • Chain 'H':
    Compound: CalE6
    Species: Micromonospora echinospora [TaxId:1877]
    Gene: calE6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4u1th_
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4u1tA (A:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvrya
dlttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvl
qqplalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflv
rrglhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivs
fdylggpaerlldrftlftcgvslggvhslvecpalmthrplsaeararrgigeslirls
vgiedpqdlaedlsralaggtlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4u1tA (A:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvrya
dlttpgiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvlq
qplalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflvr
rglhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivsf
dylggpaerlldrftlftcgvslggvhslvecpalmthgigeslirlsvgiedpqdlaed
lsralagg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4u1tB (B:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvrya
dlttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvl
qqplalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflv
rrglhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivs
fdylggpaerlldrftlftcgvslggvhslvecpalmthrplsaeararrgigeslirls
vgiedpqdlaedlsralaggtlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4u1tB (B:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqpryfygrgenptreeleecla
glerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvryadl
ttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvlqq
plalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflvrr
glhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivsfd
ylggpaerlldrftlftcgvslggvhslvecpalmthrplsaeararrgigeslirlsvg
iedpqdlaedlsralag

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4u1tC (C:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvrya
dlttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvl
qqplalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflv
rrglhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivs
fdylggpaerlldrftlftcgvslggvhslvecpalmthrplsaeararrgigeslirls
vgiedpqdlaedlsralaggtlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4u1tC (C:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqpryfygrgenptreeleecla
glerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvryadl
ttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvlqq
plalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflvrr
glhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivsfd
ylggpaerlldrftlftcgvslggvhslvecpalmigeslirlsvgiedpqdlaedlsra
la

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4u1tD (D:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvrya
dlttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvl
qqplalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflv
rrglhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivs
fdylggpaerlldrftlftcgvslggvhslvecpalmthrplsaeararrgigeslirls
vgiedpqdlaedlsralaggtlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4u1tD (D:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqpryfygrgenptreeleecla
glerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvryadl
ttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvlqq
plalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflvrr
glhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivsfd
ylggpaerlldrftlftcgvslggvhslvecpalmgeslirlsvgiedpqdlaedlsral
a

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4u1tE (E:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvrya
dlttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvl
qqplalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflv
rrglhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivs
fdylggpaerlldrftlftcgvslggvhslvecpalmthrplsaeararrgigeslirls
vgiedpqdlaedlsralaggtlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4u1tE (E:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvrya
dlttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvl
qqplalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflv
rrglhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivs
fdylggpaerlldrftlftcgvslggvhslvecpalmgigeslirlsvgiedpqdlaedl
sralag

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4u1tF (F:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvrya
dlttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvl
qqplalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflv
rrglhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivs
fdylggpaerlldrftlftcgvslggvhslvecpalmthrplsaeararrgigeslirls
vgiedpqdlaedlsralaggtlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4u1tF (F:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqpryfygrgenptreeleecla
glerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvryadl
ttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvlqq
plalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflvrr
glhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivsfd
ylggpaerlldrftlftcgvslggvhslvecpalmthrplsaeararrgigeslirlsvg
iedpqdlaedlsralag

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >4u1tG (G:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvrya
dlttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvl
qqplalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflv
rrglhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivs
fdylggpaerlldrftlftcgvslggvhslvecpalmthrplsaeararrgigeslirls
vgiedpqdlaedlsralaggtlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4u1tG (G:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqpryfygrgenptreeleecla
glerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvryadl
ttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvlqq
plalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflvrr
glhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivsfd
ylggpaerlldrftlftcgvslggvhslvecpalmgigeslirlsvgiedpqdlaedlsr
ala

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4u1tH (H:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqdepryfygrgenptreeleec
laglerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvrya
dlttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvl
qqplalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflv
rrglhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivs
fdylggpaerlldrftlftcgvslggvhslvecpalmthrplsaeararrgigeslirls
vgiedpqdlaedlsralaggtlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >4u1tH (H:)
msgmrfdtrlvhggrrpsagtgdvvppihvsttyerraqpryfygrgenptreeleecla
glerapfatvfssgqaaaatllslvrpgqcvvstddvyagtdglfdlaarqgvrvryadl
ttpegiaaalaepdlalvwietptnplltvvdvaevsrrahergarvvvdntfaspvlqq
plalgadvslysttksiaghadvlggalvyrdadlhaavrayrttagnvpgaldcflvrr
glhtlslrvhrqvatarvlverlraspvvgavhypglpehpqhavvkaqmsapgaivsfd
ylggpaerlldrftlftcgvslggvhslvecpalmtgigeslirlsvgiedpqdlaedls
ralag