PDB entry 4tqo

View 4tqo on RCSB PDB site
Description: The crystal structure of methanol dehydrogenase from Methylococcus capsulatus (Bath)
Class: oxidoreductase
Keywords: dimer, 8-fold core propeller fold, OXIDOREDUCTASE
Deposited on 2014-06-11, released 2014-09-24
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-10-22, with a file datestamp of 2014-10-17.
Experiment type: XRAY
Resolution: 2.57 Å
R-factor: 0.16
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Methanol dehydrogenase protein, large subunit
    Species: Methylococcus capsulatus [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4tqoa_
  • Chain 'B':
    Compound: Methanol dehydrogenase protein, large subunit
    Species: Methylococcus capsulatus [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4tqob_
  • Chain 'C':
    Compound: Methanol dehydrogenase protein, large subunit
    Species: Methylococcus capsulatus [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4tqoc_
  • Chain 'D':
    Compound: Methanol dehydrogenase protein, large subunit
    Species: Methylococcus capsulatus [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4tqod_
  • Chain 'E':
    Compound: Methanol dehydrogenase protein, large subunit
    Species: Methylococcus capsulatus [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4tqoe_
  • Chain 'F':
    Compound: Methanol dehydrogenase protein, large subunit
    Species: Methylococcus capsulatus [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4tqof_
  • Chain 'G':
    Compound: Methanol dehydrogenase protein, large subunit
    Species: Methylococcus capsulatus [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4tqog_
  • Chain 'H':
    Compound: Methanol dehydrogenase protein, large subunit
    Species: Methylococcus capsulatus [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4tqoh_
  • Chain 'I':
    Compound: Methanol dehydrogenase, small subunit
    Species: Methylococcus capsulatus [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4tqoi_
  • Chain 'J':
    Compound: Methanol dehydrogenase, small subunit
    Species: Methylococcus capsulatus [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4tqoj_
  • Chain 'K':
    Compound: Methanol dehydrogenase, small subunit
    Species: Methylococcus capsulatus [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4tqok_
  • Chain 'L':
    Compound: Methanol dehydrogenase, small subunit
    Species: Methylococcus capsulatus [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4tqol_
  • Chain 'M':
    Compound: Methanol dehydrogenase, small subunit
    Species: Methylococcus capsulatus [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4tqom_
  • Chain 'N':
    Compound: Methanol dehydrogenase, small subunit
    Species: Methylococcus capsulatus [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4tqon_
  • Chain 'O':
    Compound: Methanol dehydrogenase, small subunit
    Species: Methylococcus capsulatus [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4tqoo_
  • Chain 'P':
    Compound: Methanol dehydrogenase, small subunit
    Species: Methylococcus capsulatus [TaxId:243233]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4tqop_
  • Heterogens: CA, PQQ, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4tqoA (A:)
nseldrlskddrnwvmqtkdysathfsrlteinshnvknlkvawtlstgtlhghegaplv
vdgimyihtpfpnnvyavdlndtrkmlwqykpkqnpaaravaccdvvnrglayvpagehg
pakiflnqldghivalnaktgeeiwkmensdiamgstltgapfvvkdkvlvgsagaelgv
rgyvtaynikdgkqewrayatgpdedllldkdfnkdnphygqfglglstwegdawkiggg
tnwgwyaydpkldmiyygsgnpapwnetmrpgdnkwtmtiwgrdadtgrakfgyqktphd
ewdyagvnymglseqevdgkltpllthpdrnglvytlnretgalvnafkiddtvnwvkkv
dlktglpirdpeystrmdhnakgicpsamgyhnqgiesydpdkklffmgvnhicmdwepf
mlpyragqffvgatlnmypgpkgmlgqvkamnavtgkmewevpekfavwggtlatagdlv
fygtldgfikardtrtgelkwqfqlpsgvighpityqhngkqyiaiysgvggwpgvglvf
dlkdptaglgavgafrelahytqmggsvfvfsl

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4tqoB (B:)
nseldrlskddrnwvmqtkdysathfsrlteinshnvknlkvawtlstgtlhghegaplv
vdgimyihtpfpnnvyavdlndtrkmlwqykpkqnpaaravaccdvvnrglayvpagehg
pakiflnqldghivalnaktgeeiwkmensdiamgstltgapfvvkdkvlvgsagaelgv
rgyvtaynikdgkqewrayatgpdedllldkdfnkdnphygqfglglstwegdawkiggg
tnwgwyaydpkldmiyygsgnpapwnetmrpgdnkwtmtiwgrdadtgrakfgyqktphd
ewdyagvnymglseqevdgkltpllthpdrnglvytlnretgalvnafkiddtvnwvkkv
dlktglpirdpeystrmdhnakgicpsamgyhnqgiesydpdkklffmgvnhicmdwepf
mlpyragqffvgatlnmypgpkgmlgqvkamnavtgkmewevpekfavwggtlatagdlv
fygtldgfikardtrtgelkwqfqlpsgvighpityqhngkqyiaiysgvggwpgvglvf
dlkdptaglgavgafrelahytqmggsvfvfsl

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4tqoC (C:)
nseldrlskddrnwvmqtkdysathfsrlteinshnvknlkvawtlstgtlhghegaplv
vdgimyihtpfpnnvyavdlndtrkmlwqykpkqnpaaravaccdvvnrglayvpagehg
pakiflnqldghivalnaktgeeiwkmensdiamgstltgapfvvkdkvlvgsagaelgv
rgyvtaynikdgkqewrayatgpdedllldkdfnkdnphygqfglglstwegdawkiggg
tnwgwyaydpkldmiyygsgnpapwnetmrpgdnkwtmtiwgrdadtgrakfgyqktphd
ewdyagvnymglseqevdgkltpllthpdrnglvytlnretgalvnafkiddtvnwvkkv
dlktglpirdpeystrmdhnakgicpsamgyhnqgiesydpdkklffmgvnhicmdwepf
mlpyragqffvgatlnmypgpkgmlgqvkamnavtgkmewevpekfavwggtlatagdlv
fygtldgfikardtrtgelkwqfqlpsgvighpityqhngkqyiaiysgvggwpgvglvf
dlkdptaglgavgafrelahytqmggsvfvfsl

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4tqoD (D:)
nseldrlskddrnwvmqtkdysathfsrlteinshnvknlkvawtlstgtlhghegaplv
vdgimyihtpfpnnvyavdlndtrkmlwqykpkqnpaaravaccdvvnrglayvpagehg
pakiflnqldghivalnaktgeeiwkmensdiamgstltgapfvvkdkvlvgsagaelgv
rgyvtaynikdgkqewrayatgpdedllldkdfnkdnphygqfglglstwegdawkiggg
tnwgwyaydpkldmiyygsgnpapwnetmrpgdnkwtmtiwgrdadtgrakfgyqktphd
ewdyagvnymglseqevdgkltpllthpdrnglvytlnretgalvnafkiddtvnwvkkv
dlktglpirdpeystrmdhnakgicpsamgyhnqgiesydpdkklffmgvnhicmdwepf
mlpyragqffvgatlnmypgpkgmlgqvkamnavtgkmewevpekfavwggtlatagdlv
fygtldgfikardtrtgelkwqfqlpsgvighpityqhngkqyiaiysgvggwpgvglvf
dlkdptaglgavgafrelahytqmggsvfvfsl

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4tqoE (E:)
nseldrlskddrnwvmqtkdysathfsrlteinshnvknlkvawtlstgtlhghegaplv
vdgimyihtpfpnnvyavdlndtrkmlwqykpkqnpaaravaccdvvnrglayvpagehg
pakiflnqldghivalnaktgeeiwkmensdiamgstltgapfvvkdkvlvgsagaelgv
rgyvtaynikdgkqewrayatgpdedllldkdfnkdnphygqfglglstwegdawkiggg
tnwgwyaydpkldmiyygsgnpapwnetmrpgdnkwtmtiwgrdadtgrakfgyqktphd
ewdyagvnymglseqevdgkltpllthpdrnglvytlnretgalvnafkiddtvnwvkkv
dlktglpirdpeystrmdhnakgicpsamgyhnqgiesydpdkklffmgvnhicmdwepf
mlpyragqffvgatlnmypgpkgmlgqvkamnavtgkmewevpekfavwggtlatagdlv
fygtldgfikardtrtgelkwqfqlpsgvighpityqhngkqyiaiysgvggwpgvglvf
dlkdptaglgavgafrelahytqmggsvfvfsl

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4tqoF (F:)
nseldrlskddrnwvmqtkdysathfsrlteinshnvknlkvawtlstgtlhghegaplv
vdgimyihtpfpnnvyavdlndtrkmlwqykpkqnpaaravaccdvvnrglayvpagehg
pakiflnqldghivalnaktgeeiwkmensdiamgstltgapfvvkdkvlvgsagaelgv
rgyvtaynikdgkqewrayatgpdedllldkdfnkdnphygqfglglstwegdawkiggg
tnwgwyaydpkldmiyygsgnpapwnetmrpgdnkwtmtiwgrdadtgrakfgyqktphd
ewdyagvnymglseqevdgkltpllthpdrnglvytlnretgalvnafkiddtvnwvkkv
dlktglpirdpeystrmdhnakgicpsamgyhnqgiesydpdkklffmgvnhicmdwepf
mlpyragqffvgatlnmypgpkgmlgqvkamnavtgkmewevpekfavwggtlatagdlv
fygtldgfikardtrtgelkwqfqlpsgvighpityqhngkqyiaiysgvggwpgvglvf
dlkdptaglgavgafrelahytqmggsvfvfsl

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4tqoG (G:)
nseldrlskddrnwvmqtkdysathfsrlteinshnvknlkvawtlstgtlhghegaplv
vdgimyihtpfpnnvyavdlndtrkmlwqykpkqnpaaravaccdvvnrglayvpagehg
pakiflnqldghivalnaktgeeiwkmensdiamgstltgapfvvkdkvlvgsagaelgv
rgyvtaynikdgkqewrayatgpdedllldkdfnkdnphygqfglglstwegdawkiggg
tnwgwyaydpkldmiyygsgnpapwnetmrpgdnkwtmtiwgrdadtgrakfgyqktphd
ewdyagvnymglseqevdgkltpllthpdrnglvytlnretgalvnafkiddtvnwvkkv
dlktglpirdpeystrmdhnakgicpsamgyhnqgiesydpdkklffmgvnhicmdwepf
mlpyragqffvgatlnmypgpkgmlgqvkamnavtgkmewevpekfavwggtlatagdlv
fygtldgfikardtrtgelkwqfqlpsgvighpityqhngkqyiaiysgvggwpgvglvf
dlkdptaglgavgafrelahytqmggsvfvfsl

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4tqoH (H:)
nseldrlskddrnwvmqtkdysathfsrlteinshnvknlkvawtlstgtlhghegaplv
vdgimyihtpfpnnvyavdlndtrkmlwqykpkqnpaaravaccdvvnrglayvpagehg
pakiflnqldghivalnaktgeeiwkmensdiamgstltgapfvvkdkvlvgsagaelgv
rgyvtaynikdgkqewrayatgpdedllldkdfnkdnphygqfglglstwegdawkiggg
tnwgwyaydpkldmiyygsgnpapwnetmrpgdnkwtmtiwgrdadtgrakfgyqktphd
ewdyagvnymglseqevdgkltpllthpdrnglvytlnretgalvnafkiddtvnwvkkv
dlktglpirdpeystrmdhnakgicpsamgyhnqgiesydpdkklffmgvnhicmdwepf
mlpyragqffvgatlnmypgpkgmlgqvkamnavtgkmewevpekfavwggtlatagdlv
fygtldgfikardtrtgelkwqfqlpsgvighpityqhngkqyiaiysgvggwpgvglvf
dlkdptaglgavgafrelahytqmggsvfvfsl

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >4tqoI (I:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedik

    Sequence, based on observed residues (ATOM records): (download) 
    >4tqoI (I:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedi

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >4tqoJ (J:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedik

    Sequence, based on observed residues (ATOM records): (download) 
    >4tqoJ (J:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedi

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >4tqoK (K:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedik

    Sequence, based on observed residues (ATOM records): (download) 
    >4tqoK (K:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedi

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >4tqoL (L:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedik

    Sequence, based on observed residues (ATOM records): (download) 
    >4tqoL (L:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedi

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4tqoM (M:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedik

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4tqoN (N:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedik

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4tqoO (O:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedik

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4tqoP (P:)
ydgthckapgncwepkpgypdkvagskydpkhdpnelnkqaesikamearnqkrvenyak
tgkfvykvedik