PDB entry 4tkp
View 4tkp on RCSB PDB site
Description: Complex of Ubc13 with the RING domain of the TRIM5alpha retroviral restriction factor
Class: ligase
Keywords: HIV restriction, TRIM5, Ubc13, E3 Ubiquitin ligase, RING dimerization, LIGASE
Deposited on
2014-05-27, released
2015-07-22
The last revision prior to the SCOPe 2.07 freeze date was dated
2017-09-27, with a file datestamp of
2017-09-22.
Experiment type: XRAY
Resolution: 2.08 Å
R-factor: N/A
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ubiquitin-conjugating enzyme E2 N
Species: Homo sapiens [TaxId:9606]
Gene: UBE2N, BLU
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d4tkpa_ - Chain 'B':
Compound: Tripartite motif-containing protein 5
Species: Macaca mulatta [TaxId:9544]
Gene: TRIM5
Database cross-references and differences (RAF-indexed):
- Heterogens: SO4, ZN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4tkpA (A:)
gtaglprriiketqrllaepvpgikaepdesnaryfhvviagpqdspfeggtfklelflp
eeypmaapkvrfmtkiyhpnvdklgricldilkdkwspalqirtvllsiqallsapnpdd
plandvaeqwktneaqaietarawtrlyamnni
Sequence, based on observed residues (ATOM records): (download)
>4tkpA (A:)
lprriiketqrllaepvpgikaepdesnaryfhvviagpqdspfeggtfklelflpeeyp
maapkvrfmtkiyhpnvdklgricldilkdkwspalqirtvllsiqallsapnpdndvae
qwktneaqaietarawtrlyamnni
- Chain 'B':
No sequence available.