PDB entry 4rzc

View 4rzc on RCSB PDB site
Description: Fv M6P-1 in complex with mannose-6-phosphate
Class: immune system
Keywords: Antibody variable fragment, mannose-6-phosphate, Immune system
Deposited on 2014-12-19, released 2015-11-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.72 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Fv M6P-1 light chain
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 4RZC (0-118)
    Domains in SCOPe 2.08: d4rzca_
  • Chain 'B':
    Compound: Fv M6P-1 heavy chain
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 4RZC (0-111)
    Domains in SCOPe 2.08: d4rzcb_
  • Chain 'C':
    Compound: Fv M6P-1 light chain
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 4RZC (Start-118)
    Domains in SCOPe 2.08: d4rzcc_
  • Chain 'D':
    Compound: Fv M6P-1 heavy chain
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 4RZC (0-111)
    Domains in SCOPe 2.08: d4rzcd_
  • Chain 'E':
    Compound: Fv M6P-1 light chain
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 4RZC (Start-118)
    Domains in SCOPe 2.08: d4rzce_
  • Chain 'F':
    Compound: Fv M6P-1 heavy chain
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 4RZC (0-111)
    Domains in SCOPe 2.08: d4rzcf_
  • Chain 'H':
    Compound: Fv M6P-1 light chain
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 4RZC (Start-118)
    Domains in SCOPe 2.08: d4rzch_
  • Chain 'L':
    Compound: Fv M6P-1 heavy chain
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 4RZC (0-111)
    Domains in SCOPe 2.08: d4rzcl_
  • Heterogens: M6P, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4rzcA (A:)
asqsvkesegdlvkpgasltltckasgfdftwytmnwvrqapgkglewiasigagvygsn
yyaswakgrftiskassttvtlqmtsltvadtatyfcardginggydiwgpgtlvtvss

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4rzcB (B:)
lvmtqtespvsaavggtvtikcqssqsvynnrlawyqqkpgqrpklliysastlasgvps
rfkgsgsgtqftltisdlewgdaatyychggyrsnddryafsggteleilss

    Sequence, based on observed residues (ATOM records): (download) 
    >4rzcB (B:)
lvmtqtespvsaaggtvtikcqssqsvynnrlawyqqkpgqrpklliysastlasgvpsr
fkgsgsgtqftltisdlewgdaatyychggyrsdryafsggteleilss

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4rzcC (C:)
asqsvkesegdlvkpgasltltckasgfdftwytmnwvrqapgkglewiasigagvygsn
yyaswakgrftiskassttvtlqmtsltvadtatyfcardginggydiwgpgtlvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >4rzcC (C:)
qsvkesegdlvkpgasltltckasgfdftwytmnwvrqapgkglewiasigagvygsnyy
aswakgrftiskassttvtlqmtsltvadtatyfcardginggydiwgpgtlvtvss

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4rzcD (D:)
lvmtqtespvsaavggtvtikcqssqsvynnrlawyqqkpgqrpklliysastlasgvps
rfkgsgsgtqftltisdlewgdaatyychggyrsnddryafsggteleilss

    Sequence, based on observed residues (ATOM records): (download) 
    >4rzcD (D:)
lvmtqtespvsaaggtvtikcqssqsvynnrlawyqqkpgqrpklliysastlasgvpsr
fkgsgsgtqftltisdlewgdaatyychggyrsnddryafsggteleilss

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4rzcE (E:)
asqsvkesegdlvkpgasltltckasgfdftwytmnwvrqapgkglewiasigagvygsn
yyaswakgrftiskassttvtlqmtsltvadtatyfcardginggydiwgpgtlvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >4rzcE (E:)
qsvkesegdlvkpgasltltckasgfdftwytmnwvrqapgkglewiasigagvygsnyy
aswakgrftiskassttvtlqmtsltvadtatyfcardginggydiwgpgtlvtvss

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4rzcF (F:)
lvmtqtespvsaavggtvtikcqssqsvynnrlawyqqkpgqrpklliysastlasgvps
rfkgsgsgtqftltisdlewgdaatyychggyrsnddryafsggteleilss

    Sequence, based on observed residues (ATOM records): (download) 
    >4rzcF (F:)
lvmtqtespvsaaggtvtikcqssqsvynnrlawyqqkpgqrpklliysastlasgvpsr
fkgsgsgtqftltisdlewgdaatyychggyrsnddryafsggteleilss

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4rzcH (H:)
asqsvkesegdlvkpgasltltckasgfdftwytmnwvrqapgkglewiasigagvygsn
yyaswakgrftiskassttvtlqmtsltvadtatyfcardginggydiwgpgtlvtvss

    Sequence, based on observed residues (ATOM records): (download) 
    >4rzcH (H:)
sqsvkesegdlvkpgasltltckasgfdftwytmnwvrqapgkglewiasigagvygsny
yaswakgrftiskassttvtlqmtsltvadtatyfcardginggydiwgpgtlvtvss

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >4rzcL (L:)
lvmtqtespvsaavggtvtikcqssqsvynnrlawyqqkpgqrpklliysastlasgvps
rfkgsgsgtqftltisdlewgdaatyychggyrsnddryafsggteleilss

    Sequence, based on observed residues (ATOM records): (download) 
    >4rzcL (L:)
lvmtqtespvsaaggtvtikcqssqsvynnrlawyqqkpgqrpklliysastlasgvpsr
fkgsgsgtqftltisdlewgdaatyychggyrnddryafsggteleilss