PDB entry 4ryf

View 4ryf on RCSB PDB site
Description: ClpP1/2 heterocomplex from Listeria monocytogenes
Class: hydrolase
Keywords: Pathogenic bacteria, Enzyme catalysis, Proteolysis, Ser-protease, Heterocomplex, ClpP, HYDROLASE
Deposited on 2014-12-15, released 2014-12-31
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-05-06, with a file datestamp of 2020-05-01.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Listeria monocytogenes [TaxId:1639]
    Gene: CLPP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ryfa_
  • Chain 'B':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Listeria monocytogenes [TaxId:1639]
    Gene: CLPP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ryfb_
  • Chain 'C':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Listeria monocytogenes [TaxId:1639]
    Gene: CLPP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ryfc_
  • Chain 'D':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Listeria monocytogenes [TaxId:1639]
    Gene: CLPP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ryfd_
  • Chain 'E':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Listeria monocytogenes [TaxId:1639]
    Gene: CLPP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ryfe_
  • Chain 'F':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Listeria monocytogenes [TaxId:1639]
    Gene: CLPP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ryff_
  • Chain 'G':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Listeria monocytogenes [TaxId:1639]
    Gene: CLPP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ryfg_
  • Chain 'H':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Listeria monocytogenes [TaxId:1639]
    Gene: CLPP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ryfh_
  • Chain 'I':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Listeria monocytogenes [TaxId:1639]
    Gene: CLPP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ryfi_
  • Chain 'J':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Listeria monocytogenes [TaxId:1639]
    Gene: CLPP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ryfj_
  • Chain 'K':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Listeria monocytogenes [TaxId:1639]
    Gene: CLPP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ryfk_
  • Chain 'L':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Listeria monocytogenes [TaxId:1639]
    Gene: CLPP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ryfl_
  • Chain 'M':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Listeria monocytogenes [TaxId:1639]
    Gene: CLPP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ryfm_
  • Chain 'N':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Listeria monocytogenes [TaxId:1639]
    Gene: CLPP
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ryfn_
  • Heterogens: NA, MLI, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4ryfA (A:)
    maentknenitniltqklidtrtvliygeinqelaedvskqllllesisndpitifinsq
    gghveagdtihdmikfikptvkvvgtgwvasagitiylaaekenrfslpntrymihqpag
    gvqgqsteieieakeiirmrerinrliaeatgqsyeqiskdtdrnfwlsvneakdygivn
    eiienrdglkmaswshpqfek
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ryfA (A:)
    itniltqklidtrtvliygeinqelaedvskqllllesisndpitifinsqgghveagdt
    ihdmikfikptvkvvgtgwvasagitiylaaekenrfslpntrymihqpaggvqgqstei
    eieakeiirmrerinrliaeatgqsyeqiskdtdrnfwlsvneakdygivneiienrdg
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4ryfB (B:)
    maentknenitniltqklidtrtvliygeinqelaedvskqllllesisndpitifinsq
    gghveagdtihdmikfikptvkvvgtgwvasagitiylaaekenrfslpntrymihqpag
    gvqgqsteieieakeiirmrerinrliaeatgqsyeqiskdtdrnfwlsvneakdygivn
    eiienrdglkmaswshpqfek
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ryfB (B:)
    itniltqklidtrtvliygeinqelaedvskqllllesisndpitifinsqgghveagdt
    ihdmikfikptvkvvgtgwvasagitiylaaekenrfslpntrymihqpaggvqgqstei
    eieakeiirmrerinrliaeatgqsyeqiskdtdrnfwlsvneakdygivneiienrd
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4ryfC (C:)
    maentknenitniltqklidtrtvliygeinqelaedvskqllllesisndpitifinsq
    gghveagdtihdmikfikptvkvvgtgwvasagitiylaaekenrfslpntrymihqpag
    gvqgqsteieieakeiirmrerinrliaeatgqsyeqiskdtdrnfwlsvneakdygivn
    eiienrdglkmaswshpqfek
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ryfC (C:)
    itniltqklidtrtvliygeinqelaedvskqllllesisndpitifinsqgghveagdt
    ihdmikfikptvkvvgtgwvasagitiylaaekenrfslpntrymihqpaggvqgqstei
    eieakeiirmrerinrliaeatgqsyeqiskdtdrnfwlsvneakdygivneiienrd
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4ryfD (D:)
    maentknenitniltqklidtrtvliygeinqelaedvskqllllesisndpitifinsq
    gghveagdtihdmikfikptvkvvgtgwvasagitiylaaekenrfslpntrymihqpag
    gvqgqsteieieakeiirmrerinrliaeatgqsyeqiskdtdrnfwlsvneakdygivn
    eiienrdglkmaswshpqfek
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ryfD (D:)
    itniltqklidtrtvliygeinqelaedvskqllllesisndpitifinsqgghveagdt
    ihdmikfikptvkvvgtgwvasagitiylaaekenrfslpntrymihqpaggvqgqstei
    eieakeiirmrerinrliaeatgqsyeqiskdtdrnfwlsvneakdygivneiienrdg
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >4ryfE (E:)
    maentknenitniltqklidtrtvliygeinqelaedvskqllllesisndpitifinsq
    gghveagdtihdmikfikptvkvvgtgwvasagitiylaaekenrfslpntrymihqpag
    gvqgqsteieieakeiirmrerinrliaeatgqsyeqiskdtdrnfwlsvneakdygivn
    eiienrdglkmaswshpqfek
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ryfE (E:)
    itniltqklidtrtvliygeinqelaedvskqllllesisndpitifinsqgghveagdt
    ihdmikfikptvkvvgtgwvasagitiylaaekenrfslpntrymihqpaggvqgqstei
    eieakeiirmrerinrliaeatgqsyeqiskdtdrnfwlsvneakdygivneiienrd
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >4ryfF (F:)
    maentknenitniltqklidtrtvliygeinqelaedvskqllllesisndpitifinsq
    gghveagdtihdmikfikptvkvvgtgwvasagitiylaaekenrfslpntrymihqpag
    gvqgqsteieieakeiirmrerinrliaeatgqsyeqiskdtdrnfwlsvneakdygivn
    eiienrdglkmaswshpqfek
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ryfF (F:)
    itniltqklidtrtvliygeinqelaedvskqllllesisndpitifinsqgghveagdt
    ihdmikfikptvkvvgtgwvasagitiylaaekenrfslpntrymihqpaggvqgqstei
    eieakeiirmrerinrliaeatgqsyeqiskdtdrnfwlsvneakdygivneiienrd
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >4ryfG (G:)
    maentknenitniltqklidtrtvliygeinqelaedvskqllllesisndpitifinsq
    gghveagdtihdmikfikptvkvvgtgwvasagitiylaaekenrfslpntrymihqpag
    gvqgqsteieieakeiirmrerinrliaeatgqsyeqiskdtdrnfwlsvneakdygivn
    eiienrdglkmaswshpqfek
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ryfG (G:)
    itniltqklidtrtvliygeinqelaedvskqllllesisndpitifinsqgghveagdt
    ihdmikfikptvkvvgtgwvasagitiylaaekenrfslpntrymihqpaggvqgqstei
    eieakeiirmrerinrliaeatgqsyeqiskdtdrnfwlsvneakdygivneiienrd
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >4ryfH (H:)
    mnliptvieqtsrgeraydiysrllkdriimlgsaiddnvansivsqllfldaqdpekdi
    flyinspggsisagmaiydtmnfvkadvqtigmgmaasmgsflltagangkrfalpnaei
    mihqplggaqgqateieiaarhilkikermntimaektgqpyeviardtdrdnfmtaqea
    kdygliddiiinksglkghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ryfH (H:)
    liptviaydiysrllkdriimlgsaiddnvansivsqllfldaqdpekdiflyinspggs
    isagmaiydtmnfvkadvqtigmgmaasmgsflltagangkrfalpnaeimihqplggaq
    gqateieiaarhilkikermntimaektgqpyeviardtdrdnfmtaqeakdygliddii
    ink
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >4ryfI (I:)
    mnliptvieqtsrgeraydiysrllkdriimlgsaiddnvansivsqllfldaqdpekdi
    flyinspggsisagmaiydtmnfvkadvqtigmgmaasmgsflltagangkrfalpnaei
    mihqplggaqgqateieiaarhilkikermntimaektgqpyeviardtdrdnfmtaqea
    kdygliddiiinksglkghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ryfI (I:)
    liptviaydiysrllkdriimlgsaiddnvansivsqllfldaqdpekdiflyinspggs
    isagmaiydtmnfvkadvqtigmgmaasmgsflltagangkrfalpnaeimihqplggaq
    gqateieiaarhilkikermntimaektgqpyeviardtdrdnfmtaqeakdygliddii
    ink
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >4ryfJ (J:)
    mnliptvieqtsrgeraydiysrllkdriimlgsaiddnvansivsqllfldaqdpekdi
    flyinspggsisagmaiydtmnfvkadvqtigmgmaasmgsflltagangkrfalpnaei
    mihqplggaqgqateieiaarhilkikermntimaektgqpyeviardtdrdnfmtaqea
    kdygliddiiinksglkghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ryfJ (J:)
    liptviaydiysrllkdriimlgsaiddnvansivsqllfldaqdpekdiflyinspggs
    isagmaiydtmnfvkadvqtigmgmaasmgsflltagangkrfalpnaeimihqplggaq
    gqateieiaarhilkikermntimaektgqpyeviardtdrdnfmtaqeakdygliddii
    inks
    

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >4ryfK (K:)
    mnliptvieqtsrgeraydiysrllkdriimlgsaiddnvansivsqllfldaqdpekdi
    flyinspggsisagmaiydtmnfvkadvqtigmgmaasmgsflltagangkrfalpnaei
    mihqplggaqgqateieiaarhilkikermntimaektgqpyeviardtdrdnfmtaqea
    kdygliddiiinksglkghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ryfK (K:)
    liptviaydiysrllkdriimlgsaiddnvansivsqllfldaqdpekdiflyinspggs
    isagmaiydtmnfvkadvqtigmgmaasmgsflltagangkrfalpnaeimihqplggaq
    gqateieiaarhilkikermntimaektgqpyeviardtdrdnfmtaqeakdygliddii
    inks
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >4ryfL (L:)
    mnliptvieqtsrgeraydiysrllkdriimlgsaiddnvansivsqllfldaqdpekdi
    flyinspggsisagmaiydtmnfvkadvqtigmgmaasmgsflltagangkrfalpnaei
    mihqplggaqgqateieiaarhilkikermntimaektgqpyeviardtdrdnfmtaqea
    kdygliddiiinksglkghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ryfL (L:)
    liptviaydiysrllkdriimlgsaiddnvansivsqllfldaqdpekdiflyinspggs
    isagmaiydtmnfvkadvqtigmgmaasmgsflltagangkrfalpnaeimihqplggaq
    gqateieiaarhilkikermntimaektgqpyeviardtdrdnfmtaqeakdygliddii
    inks
    

  • Chain 'M':
    Sequence, based on SEQRES records: (download)
    >4ryfM (M:)
    mnliptvieqtsrgeraydiysrllkdriimlgsaiddnvansivsqllfldaqdpekdi
    flyinspggsisagmaiydtmnfvkadvqtigmgmaasmgsflltagangkrfalpnaei
    mihqplggaqgqateieiaarhilkikermntimaektgqpyeviardtdrdnfmtaqea
    kdygliddiiinksglkghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ryfM (M:)
    liptviaydiysrllkdriimlgsaiddnvansivsqllfldaqdpekdiflyinspggs
    isagmaiydtmnfvkadvqtigmgmaasmgsflltagangkrfalpnaeimihqplggaq
    gqateieiaarhilkikermntimaektgqpyeviardtdrdnfmtaqeakdygliddii
    ink
    

  • Chain 'N':
    Sequence, based on SEQRES records: (download)
    >4ryfN (N:)
    mnliptvieqtsrgeraydiysrllkdriimlgsaiddnvansivsqllfldaqdpekdi
    flyinspggsisagmaiydtmnfvkadvqtigmgmaasmgsflltagangkrfalpnaei
    mihqplggaqgqateieiaarhilkikermntimaektgqpyeviardtdrdnfmtaqea
    kdygliddiiinksglkghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ryfN (N:)
    liptviaydiysrllkdriimlgsaiddnvansivsqllfldaqdpekdiflyinspggs
    isagmaiydtmnfvkadvqtigmgmaasmgsflltagangkrfalpnaeimihqplggaq
    gqateieiaarhilkikermntimaektgqpyeviardtdrdnfmtaqeakdygliddii
    inks