PDB entry 4rk0

View 4rk0 on RCSB PDB site
Description: Crystal structure of LacI family transcriptional regulator from Enterococcus faecalis V583, Target EFI-512923, with bound ribose
Class: transcription regulator
Keywords: sugar binding, transcription regulation, Enzyme Function Initiative, EFI, structural genomics, transcriptional factor, D-glucose, TRANSCRIPTION REGULATOR
Deposited on 2014-10-11, released 2014-10-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: LacI family sugar-binding transcriptional regulator
    Species: Enterococcus faecalis V583 [TaxId:226185]
    Gene: EF_2962, I574_00070, OO5_00598
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q82ZT5 (Start-273)
      • conflict (40)
    Domains in SCOPe 2.08: d4rk0a_
  • Chain 'B':
    Compound: LacI family sugar-binding transcriptional regulator
    Species: Enterococcus faecalis V583 [TaxId:226185]
    Gene: EF_2962, I574_00070, OO5_00598
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q82ZT5 (Start-273)
      • conflict (40)
    Domains in SCOPe 2.08: d4rk0b_
  • Chain 'C':
    Compound: LacI family sugar-binding transcriptional regulator
    Species: Enterococcus faecalis V583 [TaxId:226185]
    Gene: EF_2962, I574_00070, OO5_00598
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q82ZT5 (Start-273)
      • conflict (40)
    Domains in SCOPe 2.08: d4rk0c_
  • Chain 'D':
    Compound: LacI family sugar-binding transcriptional regulator
    Species: Enterococcus faecalis V583 [TaxId:226185]
    Gene: EF_2962, I574_00070, OO5_00598
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q82ZT5 (Start-273)
      • conflict (40)
    Domains in SCOPe 2.08: d4rk0d_
  • Heterogens: RIB, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4rk0A (A:)
smvmkksktigvivpditnpffaqlirgiesvlykenfililcnadqdvtreheylteli
rrsvdgfviasseisnqtinetlrakkipfivldqkkaegfsdavltddyrggqlaakhl
qeqrheqvivvmpphapvniqqrlkgfcsvytekvqlietelsktggyqavpeilktest
gifaindeiafglyrglaeagkkipedysiigydnvdmceyvspplttiaqpvfqlgqtt
atlllerihqpakdweeqtlpvqlierfstaplk

    Sequence, based on observed residues (ATOM records): (download) 
    >4rk0A (A:)
sktigvivpditnpffaqlirgiesvlykenfililcnadqdvtreheyltelirrsvdg
fviasseisnqtinetlrakkipfivldqkkaegfsdavltddyrggqlaakhlqeqrhe
qvivvmpphapvniqqrlkgfcsvytekvqlietelsktggyqavpeilktestgifain
deiafglyrglaeagkkipedysiigydnvdmceyvspplttiaqpvfqlgqttatllle
rihqpakdweeqtlpvqlierfstaplk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4rk0B (B:)
smvmkksktigvivpditnpffaqlirgiesvlykenfililcnadqdvtreheylteli
rrsvdgfviasseisnqtinetlrakkipfivldqkkaegfsdavltddyrggqlaakhl
qeqrheqvivvmpphapvniqqrlkgfcsvytekvqlietelsktggyqavpeilktest
gifaindeiafglyrglaeagkkipedysiigydnvdmceyvspplttiaqpvfqlgqtt
atlllerihqpakdweeqtlpvqlierfstaplk

    Sequence, based on observed residues (ATOM records): (download) 
    >4rk0B (B:)
ktigvivpditnpffaqlirgiesvlykenfililcnadqdvtreheyltelirrsvdgf
viasseisnqtinetlrakkipfivldqkkaegfsdavltddyrggqlaakhlqeqrheq
vivvmpphapvniqqrlkgfcsvytekvqlietelsktggyqavpeilktestgifaind
eiafglyrglaeagkkipedysiigydnvdmceyvspplttiaqpvfqlgqttatlller
ihqpakdweeqtlpvqlierfstaplk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4rk0C (C:)
smvmkksktigvivpditnpffaqlirgiesvlykenfililcnadqdvtreheylteli
rrsvdgfviasseisnqtinetlrakkipfivldqkkaegfsdavltddyrggqlaakhl
qeqrheqvivvmpphapvniqqrlkgfcsvytekvqlietelsktggyqavpeilktest
gifaindeiafglyrglaeagkkipedysiigydnvdmceyvspplttiaqpvfqlgqtt
atlllerihqpakdweeqtlpvqlierfstaplk

    Sequence, based on observed residues (ATOM records): (download) 
    >4rk0C (C:)
sktigvivpditnpffaqlirgiesvlykenfililcnadqdvtreheyltelirrsvdg
fviasseisnqtinetlrakkipfivldqkkaegfsdavltddyrggqlaakhlqeqrhe
qvivvmpphapvniqqrlkgfcsvytekvqlietelsktggyqavpeilktestgifain
deiafglyrglaeagkkipedysiigydnvdmceyvspplttiaqpvfqlgqttatllle
rihqpakdweeqtlpvqlierfstaplk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4rk0D (D:)
smvmkksktigvivpditnpffaqlirgiesvlykenfililcnadqdvtreheylteli
rrsvdgfviasseisnqtinetlrakkipfivldqkkaegfsdavltddyrggqlaakhl
qeqrheqvivvmpphapvniqqrlkgfcsvytekvqlietelsktggyqavpeilktest
gifaindeiafglyrglaeagkkipedysiigydnvdmceyvspplttiaqpvfqlgqtt
atlllerihqpakdweeqtlpvqlierfstaplk

    Sequence, based on observed residues (ATOM records): (download) 
    >4rk0D (D:)
ksktigvivpditnpffaqlirgiesvlykenfililcnadqdvtreheyltelirrsvd
gfviasseisnqtinetlrakkipfivldqkkaegfsdavltddyrggqlaakhlqeqrh
eqvivvmpphapvniqqrlkgfcsvytekvqlietelsktggyqavpeilktestgifai
ndeiafglyrglaeagkkipedysiigydnvdmceyvspplttiaqpvfqlgqttatlll
erihqpakdweeqtlpvqlierfstaplk