PDB entry 4rf1
View 4rf1 on RCSB PDB site
Description: Crystal structure of the Middle-East respiratory syndrome coronavirus papain-like protease in complex with ubiquitin (space group P63)
Class: protein binding
Keywords: zinc ribbon, deubiquitinase, papain-like protease, PROTEIN BINDING
Deposited on
2014-09-24, released
2014-10-22
The last revision prior to the SCOPe 2.06 freeze date was dated
2015-01-14, with a file datestamp of
2015-01-09.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.202
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: ORF1ab protein
Species: Human betacoronavirus 2c Jordan-N3/2012 [TaxId:1306931]
Gene: orf1ab
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4rf1a1, d4rf1a2 - Chain 'B':
Compound: ubiquitin-60s ribosomal protein l40
Species: Homo sapiens [TaxId:9606]
Gene: UBA52, UBCEP2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4rf1b_ - Heterogens: ZN, PGO, 3CN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4rf1A (A:)
tqqltievlvtvdgvnfrtvvlnnkntyrsqlgcvffngadisdtipdekqnghslylad
nltadetkalkelygpvdptflhrfyslkaavhgwkmvvcdkvrslklsdnncylnavim
tldllkdikfvipalqhafmkhkggdstdfialimaygnctfgapddasrllhtvlakae
lccsarmvwrewcnvcgikdvvlqglkaccyvgvqtvedlrarmtyvcqcggerhrqlve
httpwlllsgtpneklvttstapdfvafnvfqgietavghyvharlkgglilkfdsgtvs
ktsdwkckvtdvlfpgqkyssdcn
Sequence, based on observed residues (ATOM records): (download)
>4rf1A (A:)
ltievlvtvdgvnfrtvvlnnkntyrsqlgcvffngadisdtipdekqnghslyladnlt
adetkalkelygpvdptflhrfyslkaavhgwkmvvcdkvrslklsdnncylnavimtld
llkdikfvipalqhafmkhkggdstdfialimaygnctfgapddasrllhtvlakaelcc
sarmvwrewcnvcgikdvvlqglkaccyvgvqtvedlrarmtyvcqcggerhrqlvehtt
pwlllsgtpneklvttstapdfvafnvfqgietavghyvharlklilkfdsgtvsktsdw
kckvtdvlfpgqkyssdcn
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>4rf1B (B:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrg