PDB entry 4qz8

View 4qz8 on RCSB PDB site
Description: Mouse Tdt in complex with a DSB substrate, C-G base pair
Class: transferase/DNA
Keywords: Terminal deoxynucleotidyltransferase, nucleus, TRANSFERASE-DNA complex
Deposited on 2014-07-27, released 2015-06-10
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-07-26, with a file datestamp of 2017-07-21.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA nucleotidylexotransferase
    Species: Mus musculus [TaxId:10090]
    Gene: DNTT, TDT
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4qz8a1, d4qz8a2, d4qz8a3
  • Chain 'D':
    Compound: 5'-d(*ap*ap*ap*ap*ap*c)-3'
  • Chain 'T':
    Compound: 5'-d(*tp*tp*tp*tp*tp*gp*g)-3'
  • Chain 'U':
    Compound: 5'-d(*ap*ap*ap*ap*ap*c)-3'
  • Heterogens: MG, NA, DCT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4qz8A (A:)
    mgsshhhhhhssglvprgshmspspvpgsqnvpapavkkisqyacqrrttlnnynqlftd
    aldilaendelrenegsclafmrassvlkslpfpitsmkdtegipclgdkvksiiegiie
    dgesseakavlnderyksfklftsvfgvglktaekwfrmgfrtlskiqsdkslrftqmqk
    agflyyedlvscvnrpeaeavsmlvkeavvtflpdalvtmtggfrrgkmtghdvdflits
    peatedeeqqllhkvtdfwkqqglllycdilestfekfkqpsrkvdaldhfqkcflilkl
    dhgrvhseksgqqegkgwkairvdlvmcpydrrafallgwtgsrqferdlrryatherkm
    mldnhalydrtkrvfleaeseeeifahlgldyiepwerna
    

    Sequence, based on observed residues (ATOM records): (download)
    >4qz8A (A:)
    kkisqyacqrrttlnnynqlftdaldilaendelrenegsclafmrassvlkslpfpits
    mkdtegipclgdkvksiiegiiedgesseakavlnderyksfklftsvfgvglktaekwf
    rmgfrtlskiqsdkslrftqmqkagflyyedlvscvnrpeaeavsmlvkeavvtflpdal
    vtmtggfrrgkmtghdvdflitspeatedeeqqllhkvtdfwkqqglllycdilestfva
    ldhfqkcflilkldhgrvhsgkgwkairvdlvmcpydrrafallgwtgsrqferdlrrya
    therkmmldnhalydrtkrvfleaeseeeifahlgldyiepwerna
    

  • Chain 'D':
    No sequence available.

  • Chain 'T':
    No sequence available.

  • Chain 'U':
    No sequence available.