PDB entry 4qpo

View 4qpo on RCSB PDB site
Description: Mechanistic basis of plasmid-specific DNA binding of the F plasmid regulatory protein, TraM
Class: transcription
Keywords: RHH Domain, DNA Binding, TRANSCRIPTION
Deposited on 2014-06-24, released 2014-09-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-12-17, with a file datestamp of 2014-12-12.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.194
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Relaxosome protein TraM
    Species: Escherichia coli [TaxId:83333]
    Gene: traM, ECOK12F071
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4qpoa_
  • Chain 'B':
    Compound: Relaxosome protein TraM
    Species: Escherichia coli [TaxId:83333]
    Gene: traM, ECOK12F071
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4qpob_
  • Chain 'C':
    Compound: Relaxosome protein TraM
    Species: Escherichia coli [TaxId:83333]
    Gene: traM, ECOK12F071
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4qpoc_
  • Chain 'D':
    Compound: Relaxosome protein TraM
    Species: Escherichia coli [TaxId:83333]
    Gene: traM, ECOK12F071
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4qpod_
  • Heterogens: PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4qpoA (A:)
akvnlyisndayekinaiiekrrqegarekdvsfsatasmllelglrvheaqm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4qpoB (B:)
akvnlyisndayekinaiiekrrqegarekdvsfsatasmllelglrvheaqm

    Sequence, based on observed residues (ATOM records): (download) 
    >4qpoB (B:)
akvnlyisndayekinaiiekrrqegarekdvsfsatasmllelglrvhea

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4qpoC (C:)
akvnlyisndayekinaiiekrrqegarekdvsfsatasmllelglrvheaqm

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4qpoD (D:)
akvnlyisndayekinaiiekrrqegarekdvsfsatasmllelglrvheaqm

    Sequence, based on observed residues (ATOM records): (download) 
    >4qpoD (D:)
akvnlyisndayekinaiiekrrqegarekdvsfsatasmllelglrvheaq