PDB entry 4qdv

View 4qdv on RCSB PDB site
Description: Dcps in complex with covalent ligand
Class: hydrolase
Keywords: Decapping scavenger enzyme, HYDROLASE
Deposited on 2014-05-14, released 2015-05-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-22, with a file datestamp of 2017-11-17.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: m7GpppX diphosphatase
    Species: Homo sapiens [TaxId:9606]
    Gene: DCPS, DCS1, HINT5, HSPC015
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4qdva1, d4qdva2
  • Chain 'B':
    Compound: m7GpppX diphosphatase
    Species: Homo sapiens [TaxId:9606]
    Gene: DCPS, DCS1, HINT5, HSPC015
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4qdvb1, d4qdvb2
  • Chain 'C':
    Compound: m7GpppX diphosphatase
    Species: Homo sapiens [TaxId:9606]
    Gene: DCPS, DCS1, HINT5, HSPC015
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4qdvc1, d4qdvc2
  • Chain 'D':
    Compound: m7GpppX diphosphatase
    Species: Homo sapiens [TaxId:9606]
    Gene: DCPS, DCS1, HINT5, HSPC015
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4qdvd1, d4qdvd2
  • Heterogens: 30U, PO4, GOL

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4qdvA (A:)
gadaapqlgkrkreldveeahaasteekeagvgngtcapvrlpfsgfrlqkvlresardk
iiflhgkvneasgdgdgedavvilektpfqveqvaqlltgspelqlqfsndiystyhlfp
prqlndvkttvvypatekhlqkylrqdlrliretgddyrnitlphlesqslsiqwvynil
dkkaeadrivfenpdpsdgfvlipdlkwnqqqlddlyliaichrrgirslrdltpehlpl
lrnilhqgqeailqryrmkgdhlrvylhylpsyyhlhvhftalgfeapgsgverahllae
vienlecdprhyqqrtltfalraddpllkllqeaqqs

    Sequence, based on observed residues (ATOM records): (download) 
    >4qdvA (A:)
vrlpfsgfrlqkvlresardkiiflhgkvedavvilektpfqveqvaqlltgspelqlqf
sniystyhlfpprqlndvkttvvypatekhlqkylrqdlrliretgddyrnitlphlesq
slsiqwvynildkkaeadrivfenpdpsdgfvlipdlkwnqqqlddlyliaichrrgirs
lrdltpehlpllrnilhqgqeailqryrmkgdhlrvylhylpsyyhlhvhftalgfeapg
sgverahllaevienlecdprhyqqrtltfalraddpllkllqeaqq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4qdvB (B:)
gadaapqlgkrkreldveeahaasteekeagvgngtcapvrlpfsgfrlqkvlresardk
iiflhgkvneasgdgdgedavvilektpfqveqvaqlltgspelqlqfsndiystyhlfp
prqlndvkttvvypatekhlqkylrqdlrliretgddyrnitlphlesqslsiqwvynil
dkkaeadrivfenpdpsdgfvlipdlkwnqqqlddlyliaichrrgirslrdltpehlpl
lrnilhqgqeailqryrmkgdhlrvylhylpsyyhlhvhftalgfeapgsgverahllae
vienlecdprhyqqrtltfalraddpllkllqeaqqs

    Sequence, based on observed residues (ATOM records): (download) 
    >4qdvB (B:)
vrlpfsgfrlqkvlresardkiiflhgkvndavvilektpfqveqvaqlltgspelqlqf
sndiystyhlfpprqlndvkttvvypatekhlqkylrqdlrliretgddyrnitlphles
qslsiqwvynildkkaeadrivfenpdpsdgfvlipdlkwnqqqlddlyliaichrrgir
slrdltpehlpllrnilhqgqeailqryrmkgdhlrvylhylpsyyhlhvhftalgfeap
gsgverahllaevienlecdprhyqqrtltfalraddpllkllqeaqq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4qdvC (C:)
gadaapqlgkrkreldveeahaasteekeagvgngtcapvrlpfsgfrlqkvlresardk
iiflhgkvneasgdgdgedavvilektpfqveqvaqlltgspelqlqfsndiystyhlfp
prqlndvkttvvypatekhlqkylrqdlrliretgddyrnitlphlesqslsiqwvynil
dkkaeadrivfenpdpsdgfvlipdlkwnqqqlddlyliaichrrgirslrdltpehlpl
lrnilhqgqeailqryrmkgdhlrvylhylpsyyhlhvhftalgfeapgsgverahllae
vienlecdprhyqqrtltfalraddpllkllqeaqqs

    Sequence, based on observed residues (ATOM records): (download) 
    >4qdvC (C:)
pvrlpfsgfrlqkvlresardkiiflhgkgedavvilektpfqveqvaqlltgspelqlq
fsndiystyhlfpprqlndvkttvvypatekhlqkylrqdlrliretgddyrnitlphle
sqslsiqwvynildkkaeadrivfenpdpsdgfvlipdlkwnqqqlddlyliaichrrgi
rslrdltpehlpllrnilhqgqeailqryrmkgdhlrvylhylpsyyhlhvhftalgfea
pgsgverahllaevienlecdprhyqqrtltfalraddpllkllqeaqq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4qdvD (D:)
gadaapqlgkrkreldveeahaasteekeagvgngtcapvrlpfsgfrlqkvlresardk
iiflhgkvneasgdgdgedavvilektpfqveqvaqlltgspelqlqfsndiystyhlfp
prqlndvkttvvypatekhlqkylrqdlrliretgddyrnitlphlesqslsiqwvynil
dkkaeadrivfenpdpsdgfvlipdlkwnqqqlddlyliaichrrgirslrdltpehlpl
lrnilhqgqeailqryrmkgdhlrvylhylpsyyhlhvhftalgfeapgsgverahllae
vienlecdprhyqqrtltfalraddpllkllqeaqqs

    Sequence, based on observed residues (ATOM records): (download) 
    >4qdvD (D:)
apvrlpfsgfrlqkvlresardkiiflhgkvnegdgedavvilektpfqveqvaqllpel
qlqfsdiystyhlfpprqlndvkttvvypatekhlqkylrqdlrliretgddyrnitlph
lesqslsiqwvynildkkaeadrivfenpdpsdgfvlipdlkwnqqqlddlyliaichrr
girslrdltpehlpllrnilhqgqeailqryrmkgdhlrvylhylpsyyhlhvhftalgf
eapgsgverahllaevienlecdprhyqqrtltfalraddpllkllqeaqqs