PDB entry 4q9u

View 4q9u on RCSB PDB site
Description: crystal structure of the rab5, rabex-5delta and rabaptin-5c21 complex
Deposited on 2014-05-01, released 2014-07-23
The last revision was dated 2017-11-22, with a file datestamp of 2017-11-17.
Experiment type: XRAY
Resolution: 4.62 Å
R-factor: N/A
AEROSPACI score: 0 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Rab5 GDP/GTP exchange factor
    Species: Homo sapiens [TaxId:9606]
    Gene: RABGEF1, RABEX5
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Ras-related protein Rab-5A
    Species: Homo sapiens [TaxId:9606]
    Gene: RAB5A, RAB5
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Rab GTPase-binding effector protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: RABEP1, RAB5EP, RABPT5, RABPT5A
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Rab GTPase-binding effector protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: RABEP1, RAB5EP, RABPT5, RABPT5A
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Rab5 GDP/GTP exchange factor
    Species: Homo sapiens [TaxId:9606]
    Gene: RABGEF1, RABEX5
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Ras-related protein Rab-5A
    Species: Homo sapiens [TaxId:9606]
    Gene: RAB5A, RAB5
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Rab GTPase-binding effector protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: RABEP1, RAB5EP, RABPT5, RABPT5A
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Rab GTPase-binding effector protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: RABEP1, RAB5EP, RABPT5, RABPT5A
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4q9uA (A:)
mghhhhhhsietdrvskefieflktfhktgqeiykqtklflegmhykrdlsieeqsecaq
dfyhnvaermqtrgkvppervekimdqiekyimtrlykyvfcpettddekkdlaiqkrir
alrwvtpqmlcvpvnedipevsdmvvkaitdiiemdskrvprdklacitkcskhifnaik
itknepasaddflptliyivlkgnpprlqsniqyitrfcnpsrlmtgedgyyftnlccav
afiekldaqslnlsqedfdrymsgqtsprkqmyknldllsqlnerqerimneakklekdl
idwtdgiarevqdivek

    Sequence, based on observed residues (ATOM records):
    >4q9uA (A:)
etdrvskefieflktfhktgqeiykqtklflegmhykrdlsieeqsecaqdfyhnvaerm
qtrgkppervekimdqiekyimtrlykyvfcpettddekkdlaiqkriralrwvtpqmlc
vpvnedipevsdmvvkaitdiiemdskrvprdklacitkcskhifnaikitknepasadd
flptliyivlkgnpprlqsniqyitrfcnpsrlmtgedgyyftnlccavafiekldaqsl
nlsqedfdrymsgqtsprkqmyknldllsqlnerqerimneakklekdlidwtdgiarev
qdi

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4q9uB (B:)
sgnkicqfklvllgesavgksslvlrfvkgqfhefqestigaafltqtvclddttvkfei
wdtagqeryhslapmyyrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgn
kadlankravdfqeaqsyaddnsllfmetsaktsmnvneifmaiakklpkn

    Sequence, based on observed residues (ATOM records):
    >4q9uB (B:)
qfklvllgesavgksslvlrfstigaafltqtvclddttvkfeiwdtagqeryhslapmy
yrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgnkadlankravdfqeaq
syaddnsllfmetsaktsmnvneifmaiakklp

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4q9uC (C:)
metrdqvkklqlmlrqandqlektmkdkqeledfikqssedsshqisalvlraqaseill
eelqqglsqakrdvqeqmavlmqsreqvseel

    Sequence, based on observed residues (ATOM records):
    >4q9uC (C:)
etrdqvkklqlmlrqandqlektmkdkqeledfikqssedsshqisalvlraqaseille
elqqglsqakrdvqeqmavlmqs

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4q9uD (D:)
metrdqvkklqlmlrqandqlektmkdkqeledfikqssedsshqisalvlraqaseill
eelqqglsqakrdvqeqmavlmqsreqvseel

    Sequence, based on observed residues (ATOM records):
    >4q9uD (D:)
kklqlmlrqandqlektmkdkqeledfikqssedsshqisalvlraqaseilleelqqgl
sqakrdvqeqmavlm

  • Chain 'E':
    Sequence, based on SEQRES records:
    >4q9uE (E:)
mghhhhhhsietdrvskefieflktfhktgqeiykqtklflegmhykrdlsieeqsecaq
dfyhnvaermqtrgkvppervekimdqiekyimtrlykyvfcpettddekkdlaiqkrir
alrwvtpqmlcvpvnedipevsdmvvkaitdiiemdskrvprdklacitkcskhifnaik
itknepasaddflptliyivlkgnpprlqsniqyitrfcnpsrlmtgedgyyftnlccav
afiekldaqslnlsqedfdrymsgqtsprkqmyknldllsqlnerqerimneakklekdl
idwtdgiarevqdivek

    Sequence, based on observed residues (ATOM records):
    >4q9uE (E:)
etdrvskefieflktfhktgqeiykqtklflegmhykrdlsieeqsecaqdfyhnvaerm
qtrgkvppervekimdqiekyimtrlykyvfcpettddekkdlaiqkriralrwvtpqml
cvpvnedipevsdmvvkaitdiiemdskrvprdklacitkcskhifnaikitkneptliy
ivlkgnpprlqsniqyitrfcnpsrlmtgedgyyftnlccavafiekldaqslnlsqedf
drymsgqtsprkqmyknldllsqlnerqerimneakklekdlidwtdgiarevqdi

  • Chain 'F':
    Sequence, based on SEQRES records:
    >4q9uF (F:)
sgnkicqfklvllgesavgksslvlrfvkgqfhefqestigaafltqtvclddttvkfei
wdtagqeryhslapmyyrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgn
kadlankravdfqeaqsyaddnsllfmetsaktsmnvneifmaiakklpkn

    Sequence, based on observed residues (ATOM records):
    >4q9uF (F:)
fklvlsslvlrfvigaafltqkfeiwdtagqeryhslapmaqaaivvydneesfaraknw
vkelqrqaspnivialsgnravdfqeaqsyaddnslfmetsaktsmnvneifmaiakklp

  • Chain 'G':
    Sequence, based on SEQRES records:
    >4q9uG (G:)
metrdqvkklqlmlrqandqlektmkdkqeledfikqssedsshqisalvlraqaseill
eelqqglsqakrdvqeqmavlmqsreqvseel

    Sequence, based on observed residues (ATOM records):
    >4q9uG (G:)
etrdqvkklqlmlrqandqlektmkdkqeledfikqssedsshqisalvlraqaseille
elqqglsqakrdvqeqmavlmqsr

  • Chain 'H':
    Sequence, based on SEQRES records:
    >4q9uH (H:)
metrdqvkklqlmlrqandqlektmkdkqeledfikqssedsshqisalvlraqaseill
eelqqglsqakrdvqeqmavlmqsreqvseel

    Sequence, based on observed residues (ATOM records):
    >4q9uH (H:)
trdqvkklqlmlrqandqlektmkdkqeledfikqssedsshqisalvlraqaseillee
lqqglsqakrdvqeqmavlmqs