PDB entry 4q9r

View 4q9r on RCSB PDB site
Description: crystal structure of an rna aptamer bound to trifluoroethyl-ligand analog in complex with fab
Deposited on 2014-05-01, released 2014-06-18
The last revision was dated 2017-07-26, with a file datestamp of 2017-07-21.
Experiment type: XRAY
Resolution: 3.12 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: Fab BL3-6, HEAVY CHAIN
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 4Q9R (0-222)
  • Chain 'L':
    Compound: Fab BL3-6, LIGHT CHAIN
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 4Q9R (0-213)
  • Chain 'R':
    Compound: Spinach RNA aptamer
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: K, 2ZY, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >4q9rH (H:)
evqlvesggglvqpggslrlscaasgfyisyssihwvrqapgkglewvasispysgstyy
adsvkgrftisadtskntaylqmnslraedtavyycarqgyrrrsgrgfdywgqgtlvtv
ssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlq
ssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >4q9rL (L:)
sdiqmtqspsslsasvgdrvtitcrasqsvssavawyqqkpgkapklliysasslysgvp
srfsgsrsgtdftltisslqpedfatyycqqsysfpstfgqgtkveikrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrge

  • Chain 'R':
    No sequence available.