PDB entry 4q9e

View 4q9e on RCSB PDB site
Description: Structure of the ternary complex of peptidoglycan recognition protein, PGRP-S with N-acetyl glucosamine and paranitro benzaldehyde at 2.3 A resolution
Class: immune system
Keywords: immune response, secreted, antimicrobial, pgrp-s, antibiotic, peptidoglycan binding, immune system
Deposited on 2014-05-01, released 2014-05-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.31 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peptidoglycan recognition protein 1
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4q9ea_
  • Chain 'B':
    Compound: Peptidoglycan recognition protein 1
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4q9eb_
  • Chain 'C':
    Compound: Peptidoglycan recognition protein 1
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4q9ec_
  • Chain 'D':
    Compound: Peptidoglycan recognition protein 1
    Species: Camelus dromedarius [TaxId:9838]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4q9ed_
  • Heterogens: NAG, XXH, GOL, TLA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4q9eA (A:)
edppacgsivprrewralasecrerltrpvryvvvshtagshcdtpascaqqaqnvqsyh
vrnlgwcdvgynfligedglvyegrgwnikgahagptwnpisigisfmgnymnrvpppra
lraaqnllacgvalgalrsnyevkghrdvqptlspgdrlyeiiqtwshyra

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4q9eB (B:)
edppacgsivprrewralasecrerltrpvryvvvshtagshcdtpascaqqaqnvqsyh
vrnlgwcdvgynfligedglvyegrgwnikgahagptwnpisigisfmgnymnrvpppra
lraaqnllacgvalgalrsnyevkghrdvqptlspgdrlyeiiqtwshyra

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4q9eC (C:)
edppacgsivprrewralasecrerltrpvryvvvshtagshcdtpascaqqaqnvqsyh
vrnlgwcdvgynfligedglvyegrgwnikgahagptwnpisigisfmgnymnrvpppra
lraaqnllacgvalgalrsnyevkghrdvqptlspgdrlyeiiqtwshyra

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4q9eD (D:)
edppacgsivprrewralasecrerltrpvryvvvshtagshcdtpascaqqaqnvqsyh
vrnlgwcdvgynfligedglvyegrgwnikgahagptwnpisigisfmgnymnrvpppra
lraaqnllacgvalgalrsnyevkghrdvqptlspgdrlyeiiqtwshyra