PDB entry 4q86

View 4q86 on RCSB PDB site
Description: YcaO with AMP Bound
Deposited on 2014-04-25, released 2014-08-13
The last revision was dated 2014-10-01, with a file datestamp of 2014-09-26.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: 0.219
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribosomal protein S12 methylthiotransferase accessory factor YcaO
    Species: Escherichia coli [TaxId:83333]
    Gene: ycaO, b0905, JW0888
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Ribosomal protein S12 methylthiotransferase accessory factor YcaO
    Species: Escherichia coli [TaxId:83333]
    Gene: ycaO, b0905, JW0888
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Ribosomal protein S12 methylthiotransferase accessory factor YcaO
    Species: Escherichia coli [TaxId:83333]
    Gene: ycaO, b0905, JW0888
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Ribosomal protein S12 methylthiotransferase accessory factor YcaO
    Species: Escherichia coli [TaxId:83333]
    Gene: ycaO, b0905, JW0888
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Ribosomal protein S12 methylthiotransferase accessory factor YcaO
    Species: Escherichia coli [TaxId:83333]
    Gene: ycaO, b0905, JW0888
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Ribosomal protein S12 methylthiotransferase accessory factor YcaO
    Species: Escherichia coli [TaxId:83333]
    Gene: ycaO, b0905, JW0888
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Ribosomal protein S12 methylthiotransferase accessory factor YcaO
    Species: Escherichia coli [TaxId:83333]
    Gene: ycaO, b0905, JW0888
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Ribosomal protein S12 methylthiotransferase accessory factor YcaO
    Species: Escherichia coli [TaxId:83333]
    Gene: ycaO, b0905, JW0888
    Database cross-references and differences (RAF-indexed):
  • Heterogens: AMP, MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4q86A (A:)
mtqtfipgkdaaledsiarfqqklsdlgfqieeaswlnpvpnvwsvhirdkecalcftng
kgatkkaalasalgeyferlstnyffadfwlgetiangpfvhypnekwfpltenddvpeg
llddrlrafydpeneltgsmlidlqsgnedrgicglpftrqsdnqtvyipmniignlyvs
ngmsagntrnearvqglsevferyvknriiaesislpeipadvlarypavveaietleae
gfpifaydgslggqypvicvvlfnpangtcfasfgahpdfgvalertvtellqgrglkdl
dvftpptfddeevaehtnlethfidssgliswdlfkqdadypfvdwnfsgtteeefatlm
aifnkedkevyiadyehlgvyacriivpgmsdiypaedlwlannsmgshlretilslpgs
ewekedylnlieqldeegfddftrvrellglatgsdngwytlrigelkamlalaggdleq
alvwtewtmefnssvfsperanyyrclqtllllaqeedrqplqylnafvrmygadaveaa
saamsgeaafyglqpvdsdlhafaahqsllkayeklqrakaafwak

    Sequence, based on observed residues (ATOM records):
    >4q86A (A:)
tqtfipgkdaaledsiarfqqklsdlgfqieeaswlnpvpnvwsvhirdkecalcftngk
gatkkaalasalgeyferlstnyffadfwlgetiangpfvhypnekwfpltenddvpegl
lddrlrafydpeneltgsmlidlqsgnedrgicglpftrqsdnqtvyipmniignlyvsn
gmsagntrnearvqglsevferyvknriiaesislpeipadvlarypavveaietleaeg
fpifaydgslggqypvicvvlfnpangtcfasfgahpdfgvalertvtellqgrglkdld
vftpptfddeevaehtnlethfidssgliswdlfkqdadypfvdwnfsgtteeefatlma
ifnkedkevyiadyehlgvyacriivpgmsdiypaedlwlannsmgshlretilslpgse
wekedylnlieqldeegfddftrvrellglatgsdngwytlrigelkamlalaggdleqa
lvwtewtmefnssvfsperanyyrclqtllllaqeedrqplqylnafvrmygadaveaas
aamsgeaafyglqpvdsdlhafaahqsllkayeklqrakaaf

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4q86B (B:)
mtqtfipgkdaaledsiarfqqklsdlgfqieeaswlnpvpnvwsvhirdkecalcftng
kgatkkaalasalgeyferlstnyffadfwlgetiangpfvhypnekwfpltenddvpeg
llddrlrafydpeneltgsmlidlqsgnedrgicglpftrqsdnqtvyipmniignlyvs
ngmsagntrnearvqglsevferyvknriiaesislpeipadvlarypavveaietleae
gfpifaydgslggqypvicvvlfnpangtcfasfgahpdfgvalertvtellqgrglkdl
dvftpptfddeevaehtnlethfidssgliswdlfkqdadypfvdwnfsgtteeefatlm
aifnkedkevyiadyehlgvyacriivpgmsdiypaedlwlannsmgshlretilslpgs
ewekedylnlieqldeegfddftrvrellglatgsdngwytlrigelkamlalaggdleq
alvwtewtmefnssvfsperanyyrclqtllllaqeedrqplqylnafvrmygadaveaa
saamsgeaafyglqpvdsdlhafaahqsllkayeklqrakaafwak

    Sequence, based on observed residues (ATOM records):
    >4q86B (B:)
tqtfipgkdaaledsiarfqqklsdlgfqieeaswlnpvpnvwsvhirdkecalcftngk
gatkkaalasalgeyferlstnyffadfwlgetiangpfvhypnekwfpltenddvpegl
lddrlrafydpeneltgsmlidlqsgnedrgicglpftrqsdnqtvyipmniignlyvsn
gmsagntrnearvqglsevferyvknriiaesislpeipadvlarypavveaietleaeg
fpifaydgslggqypvicvvlfnpangtcfasfgahpdfgvalertvtellqgrglkdld
vftpptfddeevaehtnlethfidssgliswdlfkqdadypfvdwnfsgtteeefatlma
ifnkedkevyiadyehlgvyacriivpgmsdiypaedlwlannsmgshlretilslpgse
wekedylnlieqldeegfddftrvrellglatgsdngwytlrigelkamlalaggdleqa
lvwtewtmefnssvfsperanyyrclqtllllaqeedrqplqylnafvrmygadaveaas
aamsgeaafyglqpvdsdlhafaahqsllkayeklqrakaafw

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4q86C (C:)
mtqtfipgkdaaledsiarfqqklsdlgfqieeaswlnpvpnvwsvhirdkecalcftng
kgatkkaalasalgeyferlstnyffadfwlgetiangpfvhypnekwfpltenddvpeg
llddrlrafydpeneltgsmlidlqsgnedrgicglpftrqsdnqtvyipmniignlyvs
ngmsagntrnearvqglsevferyvknriiaesislpeipadvlarypavveaietleae
gfpifaydgslggqypvicvvlfnpangtcfasfgahpdfgvalertvtellqgrglkdl
dvftpptfddeevaehtnlethfidssgliswdlfkqdadypfvdwnfsgtteeefatlm
aifnkedkevyiadyehlgvyacriivpgmsdiypaedlwlannsmgshlretilslpgs
ewekedylnlieqldeegfddftrvrellglatgsdngwytlrigelkamlalaggdleq
alvwtewtmefnssvfsperanyyrclqtllllaqeedrqplqylnafvrmygadaveaa
saamsgeaafyglqpvdsdlhafaahqsllkayeklqrakaafwak

    Sequence, based on observed residues (ATOM records):
    >4q86C (C:)
aledsiarfqqklsdlgfqieeaswlnpvpnvwsvhirdkecalcftngkgatkkaalas
algeyferlstnyffadfwlgetiangpfvhypnekwfpltenddvpegllddrlrafyd
peneltgsmlidlqsgnedrgicglpftrqsdnqtvyipmniignlyvsngmsagntrne
arvqglsevferyvknriiaesislpeipadvlarypavveaietleaegfpifaydgsl
ggqypvicvvlfnpangtcfasfgahpdfgvalertvtellqgrglkdldvftpptfdde
evaehtnlethfidssgliswdlfkqdadypfvdwnfsgtteeefatlmaifnkedkevy
iadyehlgvyacriivpgmsdiypaedlwlannsmgshlretilslpgsewekedylnli
eqldeegfddftrvrellglatgsdngwytlrigelkamlalaggdleqalvwtewtmef
nssvfsperanyyrclqtllllaqeedrqplqylnafvrmygadaveaasaamsgeaafy
glqpvdsdlhafaahqsllkayeklqraka

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4q86D (D:)
mtqtfipgkdaaledsiarfqqklsdlgfqieeaswlnpvpnvwsvhirdkecalcftng
kgatkkaalasalgeyferlstnyffadfwlgetiangpfvhypnekwfpltenddvpeg
llddrlrafydpeneltgsmlidlqsgnedrgicglpftrqsdnqtvyipmniignlyvs
ngmsagntrnearvqglsevferyvknriiaesislpeipadvlarypavveaietleae
gfpifaydgslggqypvicvvlfnpangtcfasfgahpdfgvalertvtellqgrglkdl
dvftpptfddeevaehtnlethfidssgliswdlfkqdadypfvdwnfsgtteeefatlm
aifnkedkevyiadyehlgvyacriivpgmsdiypaedlwlannsmgshlretilslpgs
ewekedylnlieqldeegfddftrvrellglatgsdngwytlrigelkamlalaggdleq
alvwtewtmefnssvfsperanyyrclqtllllaqeedrqplqylnafvrmygadaveaa
saamsgeaafyglqpvdsdlhafaahqsllkayeklqrakaafwak

    Sequence, based on observed residues (ATOM records):
    >4q86D (D:)
tqtfipgkdaaledsiarfqqklsdlgfqieeaswlnpvpnvwsvhirdkecalcftngk
gatkkaalasalgeyferlstnyffadfwlgetiangpfvhypnekwfpltenddvpegl
lddrlrafydpeneltgsmlidlqsgnedrgicglpftrqsdnqtvyipmniignlyvsn
gmsagntrnearvqglsevferyvknriiaesislpeipadvlarypavveaietleaeg
fpifaydgslggqypvicvvlfnpangtcfasfgahpdfgvalertvtellqgrglkdld
vftpptfddeevaehtnlethfidssgliswdlfkqdadypfvdwnfsgtteeefatlma
ifnkedkevyiadyehlgvyacriivpgmsdiypaedlwlannsmgshlretilslpgse
wekedylnlieqldeegfddftrvrellglatgsdngwytlrigelkamlalaggdleqa
lvwtewtmefnssvfsperanyyrclqtllllaqeedrqplqylnafvrmygadaveaas
aamsgeaafyglqpvdsdlhafaahqsllkayeklqrakaaf

  • Chain 'E':
    Sequence, based on SEQRES records:
    >4q86E (E:)
mtqtfipgkdaaledsiarfqqklsdlgfqieeaswlnpvpnvwsvhirdkecalcftng
kgatkkaalasalgeyferlstnyffadfwlgetiangpfvhypnekwfpltenddvpeg
llddrlrafydpeneltgsmlidlqsgnedrgicglpftrqsdnqtvyipmniignlyvs
ngmsagntrnearvqglsevferyvknriiaesislpeipadvlarypavveaietleae
gfpifaydgslggqypvicvvlfnpangtcfasfgahpdfgvalertvtellqgrglkdl
dvftpptfddeevaehtnlethfidssgliswdlfkqdadypfvdwnfsgtteeefatlm
aifnkedkevyiadyehlgvyacriivpgmsdiypaedlwlannsmgshlretilslpgs
ewekedylnlieqldeegfddftrvrellglatgsdngwytlrigelkamlalaggdleq
alvwtewtmefnssvfsperanyyrclqtllllaqeedrqplqylnafvrmygadaveaa
saamsgeaafyglqpvdsdlhafaahqsllkayeklqrakaafwak

    Sequence, based on observed residues (ATOM records):
    >4q86E (E:)
tfipgkdaaledsiarfqqklsdlgfqieeaswlnpvpnvwsvhirdkecalcftngkga
tkkaalasalgeyferlstnyffadfwlgetiangpfvhypnekwfpltenddvpeglld
drlrafydpeneltgsmlidlqsgnedrgicglpftrqsdnqtvyipmniignlyvsngm
sagntrnearvqglsevferyvknriiaesislpeipadvlarypavveaietleaegfp
ifaydgslggqypvicvvlfnpangtcfasfgahpdfgvalertvtellqgrglkdldvf
tpptfddeevaehtnlethfidssgliswdlfkqdadypfvdwnfsgtteeefatlmaif
nkedkevyiadyehlgvyacriivpgmsdiypaedlwlannsmgshlretilslpgsewe
kedylnlieqldeegfddftrvrellglatgsdngwytlrigelkamlalaggdleqalv
wtewtmefnssvfsperanyyrclqtllllaqeedrqplqylnafvrmygadaveaasaa
msgeaafyglqpvdsdlhafaahqsllkayeklqraka

  • Chain 'F':
    Sequence, based on SEQRES records:
    >4q86F (F:)
mtqtfipgkdaaledsiarfqqklsdlgfqieeaswlnpvpnvwsvhirdkecalcftng
kgatkkaalasalgeyferlstnyffadfwlgetiangpfvhypnekwfpltenddvpeg
llddrlrafydpeneltgsmlidlqsgnedrgicglpftrqsdnqtvyipmniignlyvs
ngmsagntrnearvqglsevferyvknriiaesislpeipadvlarypavveaietleae
gfpifaydgslggqypvicvvlfnpangtcfasfgahpdfgvalertvtellqgrglkdl
dvftpptfddeevaehtnlethfidssgliswdlfkqdadypfvdwnfsgtteeefatlm
aifnkedkevyiadyehlgvyacriivpgmsdiypaedlwlannsmgshlretilslpgs
ewekedylnlieqldeegfddftrvrellglatgsdngwytlrigelkamlalaggdleq
alvwtewtmefnssvfsperanyyrclqtllllaqeedrqplqylnafvrmygadaveaa
saamsgeaafyglqpvdsdlhafaahqsllkayeklqrakaafwak

    Sequence, based on observed residues (ATOM records):
    >4q86F (F:)
gkdaaledsiarfqqklsdlgfqieeaswlnpvpnvwsvhirdkecalcftngkgatkka
alasalgeyferlstnyffadfwlgetiangpfvhypnekwfpltenddvpegllddrlr
afydpeneltgsmlidlqsgnedrgicglpftrqsdnqtvyipmniignlyvsngmsagn
trnearvqglsevferyvknriiaesislpeipadvlarypavveaietleaegfpifay
dgslggqypvicvvlfnpangtcfasfgahpdfgvalertvtellqgrglkdldvftppt
fddeevaehtnlethfidssgliswdlfkqdadypfvdwnfsgtteeefatlmaifnked
kevyiadyehlgvyacriivpgmsdiypaedlwlannsmgshlretilslpgsewekedy
lnlieqldeegfddftrvrellglatgsdngwytlrigelkamlalaggdleqalvwtew
tmefnssvfsperanyyrclqtllllaqeedrqplqylnafvrmygadaveaasaamsge
aafyglqpvdsdlhafaahqsllkayeklqraka

  • Chain 'G':
    Sequence, based on SEQRES records:
    >4q86G (G:)
mtqtfipgkdaaledsiarfqqklsdlgfqieeaswlnpvpnvwsvhirdkecalcftng
kgatkkaalasalgeyferlstnyffadfwlgetiangpfvhypnekwfpltenddvpeg
llddrlrafydpeneltgsmlidlqsgnedrgicglpftrqsdnqtvyipmniignlyvs
ngmsagntrnearvqglsevferyvknriiaesislpeipadvlarypavveaietleae
gfpifaydgslggqypvicvvlfnpangtcfasfgahpdfgvalertvtellqgrglkdl
dvftpptfddeevaehtnlethfidssgliswdlfkqdadypfvdwnfsgtteeefatlm
aifnkedkevyiadyehlgvyacriivpgmsdiypaedlwlannsmgshlretilslpgs
ewekedylnlieqldeegfddftrvrellglatgsdngwytlrigelkamlalaggdleq
alvwtewtmefnssvfsperanyyrclqtllllaqeedrqplqylnafvrmygadaveaa
saamsgeaafyglqpvdsdlhafaahqsllkayeklqrakaafwak

    Sequence, based on observed residues (ATOM records):
    >4q86G (G:)
pgkdaaledsiarfqqklsdlgfqieeaswlnpvpnvwsvhirdkecalcftngkgatkk
aalasalgeyferlstnyffadfwlgetiangpfvhypnekwfpltenddvpegllddrl
rafydpeneltgsmlidlqsgnedrgicglpftrqsdnqtvyipmniignlyvsngmsag
ntrnearvqglsevferyvknriiaesislpeipadvlarypavveaietleaegfpifa
ydgslggqypvicvvlfnpangtcfasfgahpdfgvalertvtellqgrglkdldvftpp
tfddeevaehtnlethfidssgliswdlfkqdadypfvdwnfsgtteeefatlmaifnke
dkevyiadyehlgvyacriivpgmsdiypaedlwlannsmgshlretilslpgseweked
ylnlieqldeegfddftrvrellglatgsdngwytlrigelkamlalaggdleqalvwte
wtmefnssvfsperanyyrclqtllllaqeedrqplqylnafvrmygadaveaasaamsg
eaafyglqpvdsdlhafaahqsllkayeklqraka

  • Chain 'H':
    Sequence, based on SEQRES records:
    >4q86H (H:)
mtqtfipgkdaaledsiarfqqklsdlgfqieeaswlnpvpnvwsvhirdkecalcftng
kgatkkaalasalgeyferlstnyffadfwlgetiangpfvhypnekwfpltenddvpeg
llddrlrafydpeneltgsmlidlqsgnedrgicglpftrqsdnqtvyipmniignlyvs
ngmsagntrnearvqglsevferyvknriiaesislpeipadvlarypavveaietleae
gfpifaydgslggqypvicvvlfnpangtcfasfgahpdfgvalertvtellqgrglkdl
dvftpptfddeevaehtnlethfidssgliswdlfkqdadypfvdwnfsgtteeefatlm
aifnkedkevyiadyehlgvyacriivpgmsdiypaedlwlannsmgshlretilslpgs
ewekedylnlieqldeegfddftrvrellglatgsdngwytlrigelkamlalaggdleq
alvwtewtmefnssvfsperanyyrclqtllllaqeedrqplqylnafvrmygadaveaa
saamsgeaafyglqpvdsdlhafaahqsllkayeklqrakaafwak

    Sequence, based on observed residues (ATOM records):
    >4q86H (H:)
tqtfipgkdaaledsiarfqqklsdlgfqieeaswlnpvpnvwsvhirdkecalcftngk
gatkkaalasalgeyferlstnyffadfwlgetiangpfvhypnekwfpltenddvpegl
lddrlrafydpeneltgsmlidlqsgnedrgicglpftrqsdnqtvyipmniignlyvsn
gmsagntrnearvqglsevferyvknriiaesislpeipadvlarypavveaietleaeg
fpifaydgslggqypvicvvlfnpangtcfasfgahpdfgvalertvtellqgrglkdld
vftpptfddeevaehtnlethfidssgliswdlfkqdadypfvdwnfsgtteeefatlma
ifnkedkevyiadyehlgvyacriivpgmsdiypaedlwlannsmgshlretilslpgse
wekedylnlieqldeegfddftrvrellglatgsdngwytlrigelkamlalaggdleqa
lvwtewtmefnssvfsperanyyrclqtllllaqeedrqplqylnafvrmygadaveaas
aamsgeaafyglqpvdsdlhafaahqsllkayeklqrakaafw