PDB entry 4q54

View 4q54 on RCSB PDB site
Description: serial time-resolved crystallography of photosystem ii using a femtosecond x-ray laser the s state after two flashes(s3)
Deposited on 2014-04-16, released 2014-07-16
Made obsolete by 4rvy on 2015-11-04

The last revision was dated 2015-11-04, with a file datestamp of 2015-10-30.
Experiment type: XRAY
Resolution: 5.5 Å
R-factor: N/A
AEROSPACI score: -0.01 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: photosystem q(b) protein 1
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A444 (0-333)
      • conflict (275)
  • Chain 'B':
    Compound: CP47 protein
    Species: Thermosynechococcus elongatus [TaxId:146786]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Photosystem II CP43 protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Photosystem II D2 protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Cytochrome b559 subunit alpha
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Cytochrome b559 subunit beta
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Photosystem II reaction center protein H
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Photosystem II reaction center protein I
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Photosystem II reaction center protein J
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: Photosystem II reaction center protein K
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: Photosystem II reaction center protein L
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: Photosystem II reaction center protein M
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: Photosystem II manganese-stabilizing polypeptide
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: Photosystem II reaction center protein T
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: Photosystem II 12 kDa extrinsic protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: cytochrome c-550
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: Photosystem II reaction center X protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Y':
    Compound: Photosystem II reaction center protein ycf12
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: Photosystem II reaction center protein Z
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'a':
    Compound: photosystem q(b) protein 1
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A444 (0-333)
      • conflict (275)
  • Chain 'b':
    Compound: CP47 protein
    Species: Thermosynechococcus elongatus [TaxId:146786]
    Database cross-references and differences (RAF-indexed):
  • Chain 'c':
    Compound: Photosystem II CP43 protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'd':
    Compound: Photosystem II D2 protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'e':
    Compound: Cytochrome b559 subunit alpha
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'f':
    Compound: Cytochrome b559 subunit beta
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'h':
    Compound: Photosystem II reaction center protein H
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'i':
    Compound: Photosystem II reaction center protein I
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'j':
    Compound: Photosystem II reaction center protein J
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'k':
    Compound: Photosystem II reaction center protein K
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'l':
    Compound: Photosystem II reaction center protein L
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'm':
    Compound: Photosystem II reaction center protein M
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'o':
    Compound: Photosystem II manganese-stabilizing polypeptide
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 't':
    Compound: Photosystem II reaction center protein T
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'u':
    Compound: Photosystem II 12 kDa extrinsic protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'v':
    Compound: cytochrome c-550
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'x':
    Compound: Photosystem II reaction center X protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'y':
    Compound: Photosystem II reaction center protein ycf12
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'z':
    Compound: Photosystem II reaction center protein Z
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: OEX, FE2, CL, BCT, CLA, PHO, BCR, PL9, SQD, LHG, CA, DGD, HEM, MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >4q54A (A:)
    anlwerfcnwvtstdnrlyvgwfgvimiptllaaticfviafiaappvdidgirepvsgs
    llygnniitgavvpssnaiglhfypiweaasldewlynggpyqliifhfllgascymgrq
    welsyrlgmrpwicvaysaplasafavfliypigqgsfsdgmplgisgtfnfmivfqaeh
    nilmhpfhqlgvagvfggalfcamhgslvtsslirettetesanygykfgqeeetyniva
    ahgyfgrlifqyasfnnsrslhfflaawpvvgvwfaalgistmafnlngfnfnhsvidak
    gnvintwadiinranlgmevmhernahnfpldla
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >4q54B (B:)
    glpwyrvhtvlindpgrliaahlmhtalvagwagsmalyelatfdpsdpvlnpmwrqgmf
    vlpfmarlgvtgswsgwsitgetgidpgfwsfegvalahivlsgllflaacwhwvywdle
    lfrdprtgepaldlpkmfgihlflagllcfgfgafhltglfgpgmwvsdpygltgsvqpv
    apewgpdgfnpynpggvvahhiaagivgiiaglfhilvrppqrlykalrmgnietvlsss
    iaavffaafvvagtmwygsattpielfgptryqwdssyfqqeinrrvqaslasgatleea
    wsaipeklafydyignnpakgglfrtgpmnkgdgiaqawkghavfrnkegeelfvrrmpa
    ffesfpviltdkngvvkadipfrraeskysfeqqgvtvsfyggelngqtftdpptvksya
    rkaifgeifefdtetlnsdgifrtsprgwftfahavfallfffghiwhgartlfrdvfsg
    idpelspeqvewgfyqkvgdvttr
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4q54C (C:)
    nsifatnrdqessgfawwagnarlinlsgkllgahvahaglivfwagamtlfelahfipe
    kpmyeqgliliphiatlgwgvgpggevvdtfpffvvgvvhlissavlgfggvyhairgpe
    tleeyssffgydwkdknkmttilgfhlivlgigalllvakamffgglydtwapgggdvrv
    itnptldprvifgyllkspfggegwivsvnnledvvgghiwigliciaggiwhilttpfg
    warrafiwsgeaylsyslgalsmmgfiatcfvwfnntvypsefygptgpeasqaqamtfl
    irdqklganvgsaqgptglgkylmrsptgeiifggetmrfwdfrgpwleplrgpngldln
    kikndiqpwqerraaeymthaplgslnsvggvateinsvnfvsprswlatshfvlafffl
    vghlwhagraraaaagfekgidresepvlsmpsld
    

    Sequence, based on observed residues (ATOM records):
    >4q54C (C:)
    atnrdqessgfawwagnarlinlsgkllgahvahaglivfwagamtlfelahfipekpmy
    eqgliliphiatlgwgvgpggevvdtfpffvvgvvhlissavlgfggvyhairgpetlee
    yssffgydwkdknkmttilgfhlivlgigalllvakamffgglydtwapgggdvrvitnp
    tldprvifgyllkspfggegwivsvnnledvvgghiwigliciaggiwhilttpfgwarr
    afiwsgeaylsyslgalsmmgfiatcfvwfnntvypsefygptgpeasqaqamtflirdq
    klganvgsaqgptglgkylmrsptgeiifggetmrfwdfrgpwleplrgpngldlnkikn
    diqpwqerraaeymthaplgslnsvggvateinsvnfvsprswlatshfvlaffflvghl
    whagraraaaagfekgidresepvlsmpsld
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >4q54D (D:)
    ergwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswythglassyleg
    cnfltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgafgligfmlrqf
    eiarlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifrfllffqgfhn
    wtlnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqaeetysmvtan
    rfwsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfisqeiraaedpe
    fetfytknlllnegirawmapqdqphenfvfpeevlprgnal
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >4q54E (E:)
    ttgerpfsdiitsvrywvihsitipalfiagwlfvstglaydvfgtprpdsyyaqeqrsi
    plvtdrfeakqqvetfleqlk
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >4q54F (F:)
    sypiftvrwvavhtlavptifflgaiaamqfiqr
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >4q54H (H:)
    arrtwlgdilrplnseygkvapgwgttplmavfmglflvflliileiynstlildgvnvs
    wkalg
    

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >4q54I (I:)
    metlkitvyivvtffvllfvfgflsgdparnpkrkdle
    

  • Chain 'J':
    Sequence, based on SEQRES records:
    >4q54J (J:)
    mmseggriplwivatvagmgvivivglffygayaglgssl
    

    Sequence, based on observed residues (ATOM records):
    >4q54J (J:)
    seggriplwivatvagmgvivivglffygayaglgssl
    

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >4q54K (K:)
    klpeayaifdplvdvlpvipvlflalafvwqaavgfr
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >4q54L (L:)
    mepnpnrqpvelnrtslylglllilvlallfssyffn
    

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >4q54M (M:)
    mevnqlgliatalfvlvpsvfliilyvqtesqqk
    

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records:
    >4q54O (O:)
    tltyddivgtglankcptlddtargaypidssqtyriarlclqpttflvkeepknkrqea
    efvptklvtrettsldqiqgelkvnsdgsltfveedgidfqpvtvqmaggeripllftvk
    nlvastqpnvtsittstdfkgefnvpsyrtanfldpkgrglasgydsaialpqakeeela
    ranvkrfsltkgqislnvakvdgrtgeiagtfeseqlsdddmgahephevkiqgvfyasi
    epa
    

  • Chain 'T':
    Sequence; same for both SEQRES and ATOM records:
    >4q54T (T:)
    metityvfifaciialfffaiffrepprit
    

  • Chain 'U':
    Sequence; same for both SEQRES and ATOM records:
    >4q54U (U:)
    elvnvvdeklgtaygekidlnntniaafiqyrglyptlaklivknapyesvedvlnipgl
    terqkqilrenlehftvtevetalveggdrynnglyk
    

  • Chain 'V':
    Sequence; same for both SEQRES and ATOM records:
    >4q54V (V:)
    aeltpevltvplnsegktitltekqylegkrlfqyacaschvggitktnpsldlrtetla
    latpprdnieglvdymknpttydgeqeiaevhpslrsadifpkmrnltekdlvaiaghil
    vepkilgdkwgggkvyy
    

  • Chain 'X':
    Sequence; same for both SEQRES and ATOM records:
    >4q54X (X:)
    titpslkgffigllsgavvlgltfavliaisqidkvqrs
    

  • Chain 'Y':
    Sequence; same for both SEQRES and ATOM records:
    >4q54Y (Y:)
    viaqltmiamigiagpmiifllavrrgnl
    

  • Chain 'Z':
    Sequence; same for both SEQRES and ATOM records:
    >4q54Z (Z:)
    mtilfqlalaalvilsfvmvigvpvayaspqdwdrskqliflgsglwialvlvvgvlnff
    vv
    

  • Chain 'a':
    Sequence; same for both SEQRES and ATOM records:
    >4q54a (a:)
    anlwerfcnwvtstdnrlyvgwfgvimiptllaaticfviafiaappvdidgirepvsgs
    llygnniitgavvpssnaiglhfypiweaasldewlynggpyqliifhfllgascymgrq
    welsyrlgmrpwicvaysaplasafavfliypigqgsfsdgmplgisgtfnfmivfqaeh
    nilmhpfhqlgvagvfggalfcamhgslvtsslirettetesanygykfgqeeetyniva
    ahgyfgrlifqyasfnnsrslhfflaawpvvgvwfaalgistmafnlngfnfnhsvidak
    gnvintwadiinranlgmevmhernahnfpldla
    

  • Chain 'b':
    Sequence; same for both SEQRES and ATOM records:
    >4q54b (b:)
    glpwyrvhtvlindpgrliaahlmhtalvagwagsmalyelatfdpsdpvlnpmwrqgmf
    vlpfmarlgvtgswsgwsitgetgidpgfwsfegvalahivlsgllflaacwhwvywdle
    lfrdprtgepaldlpkmfgihlflagllcfgfgafhltglfgpgmwvsdpygltgsvqpv
    apewgpdgfnpynpggvvahhiaagivgiiaglfhilvrppqrlykalrmgnietvlsss
    iaavffaafvvagtmwygsattpielfgptryqwdssyfqqeinrrvqaslasgatleea
    wsaipeklafydyignnpakgglfrtgpmnkgdgiaqawkghavfrnkegeelfvrrmpa
    ffesfpviltdkngvvkadipfrraeskysfeqqgvtvsfyggelngqtftdpptvksya
    rkaifgeifefdtetlnsdgifrtsprgwftfahavfallfffghiwhgartlfrdvfsg
    idpelspeqvewgfyqkvgdvttr
    

  • Chain 'c':
    Sequence; same for both SEQRES and ATOM records:
    >4q54c (c:)
    nsifatnrdqessgfawwagnarlinlsgkllgahvahaglivfwagamtlfelahfipe
    kpmyeqgliliphiatlgwgvgpggevvdtfpffvvgvvhlissavlgfggvyhairgpe
    tleeyssffgydwkdknkmttilgfhlivlgigalllvakamffgglydtwapgggdvrv
    itnptldprvifgyllkspfggegwivsvnnledvvgghiwigliciaggiwhilttpfg
    warrafiwsgeaylsyslgalsmmgfiatcfvwfnntvypsefygptgpeasqaqamtfl
    irdqklganvgsaqgptglgkylmrsptgeiifggetmrfwdfrgpwleplrgpngldln
    kikndiqpwqerraaeymthaplgslnsvggvateinsvnfvsprswlatshfvlafffl
    vghlwhagraraaaagfekgidresepvlsmpsld
    

  • Chain 'd':
    Sequence, based on SEQRES records:
    >4q54d (d:)
    ergwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswythglassyleg
    cnfltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgafgligfmlrqf
    eiarlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifrfllffqgfhn
    wtlnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqaeetysmvtan
    rfwsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfisqeiraaedpe
    fetfytknlllnegirawmapqdqphenfvfpeevlprgnal
    

    Sequence, based on observed residues (ATOM records):
    >4q54d (d:)
    rgwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswythglassylegc
    nfltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgafgligfmlrqfe
    iarlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifrfllffqgfhnw
    tlnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqaeetysmvtanr
    fwsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfisqeiraaedpef
    etfytknlllnegirawmapqdqphenfvfpeevlprgnal
    

  • Chain 'e':
    Sequence; same for both SEQRES and ATOM records:
    >4q54e (e:)
    ttgerpfsdiitsvrywvihsitipalfiagwlfvstglaydvfgtprpdsyyaqeqrsi
    plvtdrfeakqqvetfleqlk
    

  • Chain 'f':
    Sequence, based on SEQRES records:
    >4q54f (f:)
    sypiftvrwvavhtlavptifflgaiaamqfiqr
    

    Sequence, based on observed residues (ATOM records):
    >4q54f (f:)
    piftvrwvavhtlavptifflgaiaamqfiqr
    

  • Chain 'h':
    Sequence; same for both SEQRES and ATOM records:
    >4q54h (h:)
    arrtwlgdilrplnseygkvapgwgttplmavfmglflvflliileiynstlildgvnvs
    wkalg
    

  • Chain 'i':
    Sequence; same for both SEQRES and ATOM records:
    >4q54i (i:)
    metlkitvyivvtffvllfvfgflsgdparnpkrkdle
    

  • Chain 'j':
    Sequence; same for both SEQRES and ATOM records:
    >4q54j (j:)
    mmseggriplwivatvagmgvivivglffygayaglgssl
    

  • Chain 'k':
    Sequence; same for both SEQRES and ATOM records:
    >4q54k (k:)
    klpeayaifdplvdvlpvipvlflalafvwqaavgfr
    

  • Chain 'l':
    Sequence; same for both SEQRES and ATOM records:
    >4q54l (l:)
    mepnpnrqpvelnrtslylglllilvlallfssyffn
    

  • Chain 'm':
    Sequence; same for both SEQRES and ATOM records:
    >4q54m (m:)
    mevnqlgliatalfvlvpsvfliilyvqtesqqk
    

  • Chain 'o':
    Sequence; same for both SEQRES and ATOM records:
    >4q54o (o:)
    tltyddivgtglankcptlddtargaypidssqtyriarlclqpttflvkeepknkrqea
    efvptklvtrettsldqiqgelkvnsdgsltfveedgidfqpvtvqmaggeripllftvk
    nlvastqpnvtsittstdfkgefnvpsyrtanfldpkgrglasgydsaialpqakeeela
    ranvkrfsltkgqislnvakvdgrtgeiagtfeseqlsdddmgahephevkiqgvfyasi
    epa
    

  • Chain 't':
    Sequence; same for both SEQRES and ATOM records:
    >4q54t (t:)
    metityvfifaciialfffaiffrepprit
    

  • Chain 'u':
    Sequence; same for both SEQRES and ATOM records:
    >4q54u (u:)
    elvnvvdeklgtaygekidlnntniaafiqyrglyptlaklivknapyesvedvlnipgl
    terqkqilrenlehftvtevetalveggdrynnglyk
    

  • Chain 'v':
    Sequence; same for both SEQRES and ATOM records:
    >4q54v (v:)
    aeltpevltvplnsegktitltekqylegkrlfqyacaschvggitktnpsldlrtetla
    latpprdnieglvdymknpttydgeqeiaevhpslrsadifpkmrnltekdlvaiaghil
    vepkilgdkwgggkvyy
    

  • Chain 'x':
    Sequence; same for both SEQRES and ATOM records:
    >4q54x (x:)
    titpslkgffigllsgavvlgltfavliaisqidkvqrs
    

  • Chain 'y':
    Sequence; same for both SEQRES and ATOM records:
    >4q54y (y:)
    viaqltmiamigiagpmiifllavrrgnl
    

  • Chain 'z':
    Sequence; same for both SEQRES and ATOM records:
    >4q54z (z:)
    mtilfqlalaalvilsfvmvigvpvayaspqdwdrskqliflgsglwialvlvvgvlnff
    vv