PDB entry 4q3a

View 4q3a on RCSB PDB site
Description: PylD cocrystallized with L-Lysine-Ne-3S-methyl-L-ornithine and NAD+
Deposited on 2014-04-11, released 2014-04-23
The last revision was dated 2014-08-20, with a file datestamp of 2014-08-15.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.171
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: PYLD, pyrrolysine synthase
    Species: METHANOSARCINA BARKERI [TaxId:269797]
    Gene: Mbar_A0835
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: PYLD, pyrrolysine synthase
    Species: METHANOSARCINA BARKERI [TaxId:269797]
    Gene: Mbar_A0835
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: PYLD, pyrrolysine synthase
    Species: METHANOSARCINA BARKERI [TaxId:269797]
    Gene: Mbar_A0835
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q46E80 (1-259)
      • expression tag (0)
  • Chain 'D':
    Compound: PYLD, pyrrolysine synthase
    Species: METHANOSARCINA BARKERI [TaxId:269797]
    Gene: Mbar_A0835
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAI, NA, MG, 2YC, GOL, PEG, EDO, SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4q3aA (A:)
smalltpddlininmqlqkadsavqevtgldikgickalygtfsssekvgivpvtsgngi
ignfsaslhaitqyfgfdsfvtdmpdvsgyyeavqngaeiilmaddrtflahnlkngkma
nnqpctgiiyaeiasrylkadskdvlvvglgkvgfpgaehlvqkdfrvygydadetller
atsnlgiipfdpanpkkfsiifeatpcantipeavlsencvlstpgipcaiseelrdkye
vqliaeplgigtasmlysvl

    Sequence, based on observed residues (ATOM records):
    >4q3aA (A:)
malltpddlininmqlqkadsavqevtgldikgickalygtfsssekvgivpvtsgngii
gnfsaslhaitqyfgfdsfvtdmpdvsgyyeavqngaeiilmaddrtflahnlkngkman
nqpctgiiyaeiasrylkadskdvlvvglgkvgfpgaehlvqkdfrvygydadetllera
tsnlgiipfdpanpkkfsiifeatpcantipeavlsencvlstpgipcaiseelrdkyev
qliaeplgigtasmlysvl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4q3aB (B:)
smalltpddlininmqlqkadsavqevtgldikgickalygtfsssekvgivpvtsgngi
ignfsaslhaitqyfgfdsfvtdmpdvsgyyeavqngaeiilmaddrtflahnlkngkma
nnqpctgiiyaeiasrylkadskdvlvvglgkvgfpgaehlvqkdfrvygydadetller
atsnlgiipfdpanpkkfsiifeatpcantipeavlsencvlstpgipcaiseelrdkye
vqliaeplgigtasmlysvl

    Sequence, based on observed residues (ATOM records):
    >4q3aB (B:)
malltpddlininmqlqkadsavqevtgldikgickalygtfsssekvgivpvtsgngii
gnfsaslhaitqyfgfdsfvtdmpdvsgyyeavqngaeiilmaddrtflahnlkngkman
nqpctgiiyaeiasrylkadskdvlvvglgkvgfpgaehlvqkdfrvygydadetllera
tsnlgiipfdpanpkkfsiifeatpcantipeavlsencvlstpgipcaiseelrdkyev
qliaeplgigtasmlysvl

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >4q3aC (C:)
smalltpddlininmqlqkadsavqevtgldikgickalygtfsssekvgivpvtsgngi
ignfsaslhaitqyfgfdsfvtdmpdvsgyyeavqngaeiilmaddrtflahnlkngkma
nnqpctgiiyaeiasrylkadskdvlvvglgkvgfpgaehlvqkdfrvygydadetller
atsnlgiipfdpanpkkfsiifeatpcantipeavlsencvlstpgipcaiseelrdkye
vqliaeplgigtasmlysvl

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4q3aD (D:)
smalltpddlininmqlqkadsavqevtgldikgickalygtfsssekvgivpvtsgngi
ignfsaslhaitqyfgfdsfvtdmpdvsgyyeavqngaeiilmaddrtflahnlkngkma
nnqpctgiiyaeiasrylkadskdvlvvglgkvgfpgaehlvqkdfrvygydadetller
atsnlgiipfdpanpkkfsiifeatpcantipeavlsencvlstpgipcaiseelrdkye
vqliaeplgigtasmlysvl

    Sequence, based on observed residues (ATOM records):
    >4q3aD (D:)
malltpddlininmqlqkadsavqevtgldikgickalygtfsssekvgivpvtsgngii
gnfsaslhaitqyfgfdsfvtdmpdvsgyyeavqngaeiilmaddrtflahnlkngkman
nqpctgiiyaeiasrylkadskdvlvvglgkvgfpgaehlvqkdfrvygydadetllera
tsnlgiipfdpanpkkfsiifeatpcantipeavlsencvlstpgipcaiseelrdkyev
qliaeplgigtasmlysvl