PDB entry 4pw5
View 4pw5 on RCSB PDB site
Description: structure of UHRF2-SRA in complex with a 5hmC-containing DNA, complex I
Class: ligase/DNA
Keywords: SRA, 5hmC binding, 5hmC-containing DNA, hydroxymethylation, nuclear, LIGASE-DNA complex
Deposited on
2014-03-18, released
2014-05-07
The last revision prior to the SCOPe 2.06 freeze date was dated
2014-06-25, with a file datestamp of
2014-06-20.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.163
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: E3 ubiquitin-protein ligase UHRF2
Species: Homo sapiens [TaxId:9606]
Gene: UHRF2, NIRF, RNF107
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4pw5a_ - Chain 'B':
Compound: E3 ubiquitin-protein ligase UHRF2
Species: Homo sapiens [TaxId:9606]
Gene: UHRF2, NIRF, RNF107
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4pw5b_ - Chain 'C':
Compound: 5hmC-containing DNA1
- Chain 'D':
Compound: 5hmC-containing DNA2
- Chain 'E':
Compound: E3 ubiquitin-protein ligase UHRF2
Species: Homo sapiens [TaxId:9606]
Gene: UHRF2, NIRF, RNF107
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4pw5e_ - Chain 'F':
Compound: E3 ubiquitin-protein ligase UHRF2
Species: Homo sapiens [TaxId:9606]
Gene: UHRF2, NIRF, RNF107
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4pw5f_ - Chain 'G':
Compound: 5hmC-containing DNA1
- Chain 'H':
Compound: 5hmC-containing DNA2
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4pw5A (A:)
stesrrdwgrgmacvgrtrectivpsnhygpipgipvgstwrfrvqvseagvhrphvggi
hgrsndgayslvlaggfadevdrgdeftytgsggknlagnkrigapsadqtltnmnrala
lncdaplddkigaesrnwragkpvrvirsfkgrkiskyapeegnrydgiykvvkywpeis
sshgflvwryllrrddvepapwtsegiersrrlclrlqypagypsdkegk
Sequence, based on observed residues (ATOM records): (download)
>4pw5A (A:)
ivpsnhygpipgipvgstwrfrvqvseagvhrphvggihgrsndgayslvlaggfadevd
rgdeftytgsggsadqtltnmnralalncdaplddkigaesrnwragkpvrvirsfkgrk
iskyapeegnrydgiykvvkywpeissshgflvwryllrrddvepapwtsegiersrrlc
lrlqypagy
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4pw5B (B:)
stesrrdwgrgmacvgrtrectivpsnhygpipgipvgstwrfrvqvseagvhrphvggi
hgrsndgayslvlaggfadevdrgdeftytgsggknlagnkrigapsadqtltnmnrala
lncdaplddkigaesrnwragkpvrvirsfkgrkiskyapeegnrydgiykvvkywpeis
sshgflvwryllrrddvepapwtsegiersrrlclrlqypagypsdkegk
Sequence, based on observed residues (ATOM records): (download)
>4pw5B (B:)
ivpsnhygpipgipvgstwrfrvqvseagvhrphvggihgrsndgayslvlaggfadevd
rgdeftytgsgsadqtltnmnralalncdaplddkigaesrnwragkpvrvirsfkgrki
skyapeegnrydgiykvvkywpeissshgflvwryllrrddvepapwtsegiersrrlcl
rlqypagy
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
Sequence, based on SEQRES records: (download)
>4pw5E (E:)
stesrrdwgrgmacvgrtrectivpsnhygpipgipvgstwrfrvqvseagvhrphvggi
hgrsndgayslvlaggfadevdrgdeftytgsggknlagnkrigapsadqtltnmnrala
lncdaplddkigaesrnwragkpvrvirsfkgrkiskyapeegnrydgiykvvkywpeis
sshgflvwryllrrddvepapwtsegiersrrlclrlqypagypsdkegk
Sequence, based on observed residues (ATOM records): (download)
>4pw5E (E:)
vpsnhygpipgipvgstwrfrvqvseagvhrphvggihgrsndgayslvlaggfadevdr
gdeftytgsggsadqtltnmnralalncdaplddkigaesrnwragkpvrvirsfkgrki
skyapeegnrydgiykvvkywpeissshgflvwryllrrddvepapwtsegiersrrlcl
rlqypagy
- Chain 'F':
Sequence, based on SEQRES records: (download)
>4pw5F (F:)
stesrrdwgrgmacvgrtrectivpsnhygpipgipvgstwrfrvqvseagvhrphvggi
hgrsndgayslvlaggfadevdrgdeftytgsggknlagnkrigapsadqtltnmnrala
lncdaplddkigaesrnwragkpvrvirsfkgrkiskyapeegnrydgiykvvkywpeis
sshgflvwryllrrddvepapwtsegiersrrlclrlqypagypsdkegk
Sequence, based on observed residues (ATOM records): (download)
>4pw5F (F:)
vpsnhygpipgipvgstwrfrvqvseagvhrphvggihgrsndgayslvlaggfadevdr
gdeftytgsgsadqtltnmnralalncdaplddkigaesrnwragkpvrvirsfkgrkis
kyapeegnrydgiykvvkywpeissshgflvwryllrrddvepapwtsegiersrrlclr
lqypagy
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.