PDB entry 4puq

View 4puq on RCSB PDB site
Description: Mus Musculus Tdp2 reaction product complex with 5'-phosphorylated RNA/DNA, glycerol, and Mg2+
Deposited on 2014-03-13, released 2014-05-14
The last revision was dated 2014-07-23, with a file datestamp of 2014-07-18.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.131
AEROSPACI score: 0.56 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tyrosyl-DNA phosphodiesterase 2
    Species: Mus musculus [TaxId:10090]
    Gene: Tdp2, Ttrap
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9JJX7 (3-255)
      • expression tag (0-2)
  • Chain 'B':
    Compound: Tyrosyl-DNA phosphodiesterase 2
    Species: Mus musculus [TaxId:10090]
    Gene: Tdp2, Ttrap
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA/RNA hybrid
    Species: synthetic, synthetic
  • Chain 'D':
    Compound: DNA/RNA hybrid
    Species: synthetic, synthetic
  • Heterogens: MG, GOL, ACT, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >4puqA (A:)
sngledsstisfitwnidgldgcnlperargvcsclalyspdvvflqevippycaylkkr
aasytiitgneegyftaillkkgrvkfksqeiipfpntkmmrnllcvnvslggnefclmt
shlestrehsaerirqlktvlgkmqeapdsttvifagdtnlrdqevikcgglpdnvfdaw
eflgkpkhcqytwdtkannnlripaaykhrfdriffraeeghlipqsldlvglekldcgr
fpsdhwgllctlnvvl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4puqB (B:)
sngledsstisfitwnidgldgcnlperargvcsclalyspdvvflqevippycaylkkr
aasytiitgneegyftaillkkgrvkfksqeiipfpntkmmrnllcvnvslggnefclmt
shlestrehsaerirqlktvlgkmqeapdsttvifagdtnlrdqevikcgglpdnvfdaw
eflgkpkhcqytwdtkannnlripaaykhrfdriffraeeghlipqsldlvglekldcgr
fpsdhwgllctlnvvl

    Sequence, based on observed residues (ATOM records):
    >4puqB (B:)
stisfitwnidgldgcnlperargvcsclalyspdvvflqevippycaylkkraasytii
tgneegyftaillkkgrvkfksqeiipfpntkmmrnllcvnvslggnefclmtshlestr
ehsaerirqlktvlgkmqeapdsttvifagdtnlrdqevikcgglpdnvfdaweflgkpk
hcqytwdtkannnlripaaykhrfdriffraeeghlipqsldlvglekldcgrfpsdhwg
llctlnvvl

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.