PDB entry 4pu4

View 4pu4 on RCSB PDB site
Description: Shewanella oneidensis MR-1 Toxin Antitoxin System HipA, HipB and its operator DNA complex (space group P21)
Deposited on 2014-03-12, released 2014-08-06
The last revision was dated 2014-09-17, with a file datestamp of 2014-09-12.
Experiment type: XRAY
Resolution: 3.79 Å
R-factor: 0.24
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Toxin-antitoxin system toxin HipA family
    Species: Shewanella oneidensis [TaxId:211586]
    Gene: SO_0706
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Toxin-antitoxin system toxin HipA family
    Species: Shewanella oneidensis [TaxId:211586]
    Gene: SO_0706
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Toxin-antitoxin system antidote transcriptional repressor Xre family
    Species: Shewanella oneidensis [TaxId:211586]
    Gene: SO_0705
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EIX4 (40-End)
      • expression tag (39)
  • Chain 'D':
    Compound: Toxin-antitoxin system antidote transcriptional repressor Xre family
    Species: Shewanella oneidensis [TaxId:211586]
    Gene: SO_0705
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EIX4 (40-End)
      • expression tag (39)
  • Chain 'P':
    Compound: Operator DNA
    Species: Shewanella oneidensis, synthetic [TaxId:70863]
  • Chain 'Q':
    Compound: Operator DNA
    Species: Shewanella oneidensis, synthetic [TaxId:70863]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4pu4A (A:)
mgsshhhhhhssglvprgshmmstaktltlemhlgdlmigelsfdatadtfavhytkdwq
qsgfplsptipldgtgtsnqismflvnllpenkgldylieslgvskgntfaliraigldt
agaiafvpkgallpetqlrpikaeeviqriedptmwpmeiwdgkprlsvagvqpklnlfy
ngkefafaegtlssthivkfekyhhlvinefitmrlakvlgmnvanvdivhfgrykalcv
erfdrrnipgeqrvlrrhivdscqalgfsvskkyernfgtgrdvkdiregvsfnrlfsla
akcrnpvaakqdmlqwalfnlltgnadahgknysffmtpsgmeptpwydlvsvdmyedfe
qqlamaiddefdpnsiyayqlaafmdglglprnllisnltriarripqaiaevilmlppl
dedeasfvahyktqllarcerylgfvdevrdvev

    Sequence, based on observed residues (ATOM records):
    >4pu4A (A:)
ltlemhlgdlmigelsfdatadtfavhytkdwqqsgfplsptipldgtgtsnqismflvn
llpenkgldylieslgvskgntfaliraigldtagaiafvpkgallpetqlrpikaeevi
qriedptmwpprlsvagvqpklnlfyngkefafaegtlssthivkfekyhhlvinefitm
rlakvlgmnvanvdivhfgrykalcverfdrrnipgeqrvlrrhivdscqalgfsvskky
ernfgtgrdvkdiregvsfnrlfslaakcrnpvaakqdmlqwalfnlltgnadahgknys
ffmtpsgmeptpwydlvsvdmyedfeqqlamaiddefdpnsiyayqlaafmdglglprnl
lisnltriarripqaiaevilmlppldedeasfvahyktqllarcerylgfvdevrdvev

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4pu4B (B:)
mgsshhhhhhssglvprgshmmstaktltlemhlgdlmigelsfdatadtfavhytkdwq
qsgfplsptipldgtgtsnqismflvnllpenkgldylieslgvskgntfaliraigldt
agaiafvpkgallpetqlrpikaeeviqriedptmwpmeiwdgkprlsvagvqpklnlfy
ngkefafaegtlssthivkfekyhhlvinefitmrlakvlgmnvanvdivhfgrykalcv
erfdrrnipgeqrvlrrhivdscqalgfsvskkyernfgtgrdvkdiregvsfnrlfsla
akcrnpvaakqdmlqwalfnlltgnadahgknysffmtpsgmeptpwydlvsvdmyedfe
qqlamaiddefdpnsiyayqlaafmdglglprnllisnltriarripqaiaevilmlppl
dedeasfvahyktqllarcerylgfvdevrdvev

    Sequence, based on observed residues (ATOM records):
    >4pu4B (B:)
ltlemhlgdlmigelsfdatadtfavhytkdwqqsgfplsptipldgtgtsnqismflvn
llpenkgldylieslgvskgntfaliraigldtagaiafvpkgallpetqlrpikaeevi
qriedptmwprlsvagvqpklnlfyngkefafaegtlssthivkfekyhhlvinefitmr
lakvlgmnvanvdivhfgrykalcverfdrrnipgeqrvlrrhivdscqalgfsvskkye
rnfgtgrdvkdiregvsfnrlfslaakcrnpvaakqdmlqwalfnlltgnadahgknysf
fmtpsgmeptpwydlvsvdmyedfeqqlamaiddefdpnsiyayqlaafmdglglprnll
isnltriarripqaiaevilmlppldedeasfvahyktqllarcerylgfvdevrdvev

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4pu4C (C:)
mgsshhhhhhssglvprgshmmngtdikakvyedtlletimasplnqqslgllikerrks
aaltqdvaamlcgvtkktlirvekgedvyistvfkildglgidivsaqtsdtetngwy

    Sequence, based on observed residues (ATOM records):
    >4pu4C (C:)
imasplnqqslgllikerrksaaltqdvaamlcgvtkktlirvekgedvyistvfkildg
lgidivsa

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4pu4D (D:)
mgsshhhhhhssglvprgshmmngtdikakvyedtlletimasplnqqslgllikerrks
aaltqdvaamlcgvtkktlirvekgedvyistvfkildglgidivsaqtsdtetngwy

    Sequence, based on observed residues (ATOM records):
    >4pu4D (D:)
imasplnqqslgllikerrksaaltqdvaamlcgvtkktlirvekgedvyistvfkildg
lgidivsaqtsdtetngw

  • Chain 'P':
    No sequence available.

  • Chain 'Q':
    No sequence available.