PDB entry 4pp2
View 4pp2 on RCSB PDB site
Description: The crystal structure of Der p 1 allergen complexed with Fab fragment of mAb 10B9
Class: immune system
Keywords: allergen, antibody, Immune system
Deposited on
2014-02-26, released
2015-04-08
Made obsolete by
5vco on
2022-04-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.74 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: light chain of Fab fragment of 10B9 antibody
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4pp2a1, d4pp2a2 - Chain 'B':
Compound: heavy chain of Fab fragment of 10B9 antibody
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4pp2b_ - Chain 'C':
Compound: light chain of Fab fragment of 10B9 antibody
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4pp2c1, d4pp2c2 - Chain 'D':
Compound: heavy chain of Fab fragment of 10B9 antibody
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4pp2d_ - Chain 'E':
Compound: Peptidase 1
Species: Dermatophagoides pteronyssinus [TaxId:6956]
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Peptidase 1
Species: Dermatophagoides pteronyssinus [TaxId:6956]
Database cross-references and differences (RAF-indexed):
- Heterogens: NAG, CA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>4pp2A (A:)
diqmtqttsslsaslgdgitiscrasqdisnylnwyqqkpdgtvklliyytsrlhsgvps
rfsgsgsgtdysltisnleqediatyfcqqgntlpytfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnr
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4pp2B (B:)
evqlvesgpslvkpsqtlsltcsvtgdsitsgfwnwirkfpgnklefmgyitysgtsyyk
pslksrisitrdtsknqyflqlnsvtaedtatyycarrgflttvnyyamdywgqgtsvtv
ssakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlq
sdlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivpr
Sequence, based on observed residues (ATOM records): (download)
>4pp2B (B:)
evqlvesgpslvkpsqtlsltcsvtgdsitsgfwnwirkfpgnklefmgyitysgtsyyk
pslksrisitrdtsknqyflqlnsvtaedtatyycarrgflttvnyyamdywgqgtsvtv
ssakttppsvyplapsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytls
ssvtvpsstwpsetvtcnvahpasstkvdkkivpr
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>4pp2C (C:)
diqmtqttsslsaslgdgitiscrasqdisnylnwyqqkpdgtvklliyytsrlhsgvps
rfsgsgsgtdysltisnleqediatyfcqqgntlpytfgggtkleikradaaptvsifpp
sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
ltkdeyerhnsytceathktstspivksfnr
- Chain 'D':
Sequence, based on SEQRES records: (download)
>4pp2D (D:)
evqlvesgpslvkpsqtlsltcsvtgdsitsgfwnwirkfpgnklefmgyitysgtsyyk
pslksrisitrdtsknqyflqlnsvtaedtatyycarrgflttvnyyamdywgqgtsvtv
ssakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlq
sdlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivpr
Sequence, based on observed residues (ATOM records): (download)
>4pp2D (D:)
evqlvesgpslvkpsqtlsltcsvtgdsitsgfwnwirkfpgnklefmgyitysgtsyyk
pslksrisitrdtsknqyflqlnsvtaedtatyycarrgflttvnyyamdywgqgtsvtv
ssakttppsvyplapgsansmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdl
ytlsssvtvpsstwpsetvtcnvahpasstkvdkkivpr
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.