PDB entry 4pp1

View 4pp1 on RCSB PDB site
Description: The crystal structure of Der p 1 allergen complexed with Fab fragment of mAb 5H8
Class: immune system
Keywords: allergen, antibody, Immune system
Deposited on 2014-02-26, released 2015-04-08
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-22, with a file datestamp of 2017-11-17.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peptidase 1
    Species: Dermatophagoides pteronyssinus [TaxId:6956]
    Gene:
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Peptidase 1
    Species: Dermatophagoides pteronyssinus [TaxId:6956]
    Gene:
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: light chain of Fab fragment of mAb 5H8
    Species: Mus musculus [TaxId:10090]
    Gene:
    Database cross-references and differences (RAF-indexed):
    • PDB 4PP1 (0-209)
    Domains in SCOPe 2.07: d4pp1c1, d4pp1c2
  • Chain 'D':
    Compound: heavy chain of Fab fragment of mAb 5H8
    Species: Mus musculus [TaxId:10090]
    Gene:
    Database cross-references and differences (RAF-indexed):
    • PDB 4PP1 (0-End)
  • Chain 'E':
    Compound: light chain of Fab fragment of mAb 5H8
    Species: Mus musculus [TaxId:10090]
    Gene:
    Database cross-references and differences (RAF-indexed):
    • PDB 4PP1 (0-209)
    Domains in SCOPe 2.07: d4pp1e1, d4pp1e2
  • Chain 'F':
    Compound: heavy chain of Fab fragment of mAb 5H8
    Species: Mus musculus [TaxId:10090]
    Gene:
    Database cross-references and differences (RAF-indexed):
    • PDB 4PP1 (0-End)
  • Heterogens: CA, PO4, EDO, NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >4pp1C (C:)
    diqmtqttsslsaslgdrvtiscrasqditnylnwyqqkpdgtvklliyytsrlhsgvps
    rfsgsgsgtdysltisnleqediatyfcqqgktlptfgggtkleikradaaptvsifpps
    seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
    tkdeyerhnsytceathktstspivksfnr
    

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >4pp1E (E:)
    diqmtqttsslsaslgdrvtiscrasqditnylnwyqqkpdgtvklliyytsrlhsgvps
    rfsgsgsgtdysltisnleqediatyfcqqgktlptfgggtkleikradaaptvsifpps
    seqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstltl
    tkdeyerhnsytceathktstspivksfnr
    

  • Chain 'F':
    No sequence available.