PDB entry 4pj0

View 4pj0 on RCSB PDB site
Description: Structure of T.elongatus Photosystem II, rows of dimers crystal packing
Class: oxidoreductase, electron transport
Keywords: Membrane Protein, Photosystem II, C12E8, OXIDOREDUCTASE, ELECTRON TRANSPORT
Deposited on 2014-05-10, released 2014-10-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-10, with a file datestamp of 2021-03-05.
Experiment type: XRAY
Resolution: 2.44 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: photosystem q(b) protein 1
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pj0a_
  • Chain 'B':
    Compound: CP47 protein
    Species: Thermosynechococcus elongatus [TaxId:146786]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pj0b_
  • Chain 'C':
    Compound: Photosystem II CP43 protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pj0c_
  • Chain 'D':
    Compound: Photosystem II D2 protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pj0d_
  • Chain 'E':
    Compound: Cytochrome b559 subunit alpha
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pj0e_
  • Chain 'F':
    Compound: Cytochrome b559 subunit beta
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pj0f_
  • Chain 'H':
    Compound: Photosystem II reaction center protein H
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pj0h_
  • Chain 'I':
    Compound: Photosystem II reaction center protein I
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pj0i_
  • Chain 'J':
    Compound: Photosystem II reaction center protein J
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pj0j_
  • Chain 'K':
    Compound: Photosystem II reaction center protein K
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pj0k_
  • Chain 'L':
    Compound: Photosystem II reaction center protein L
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pj0l_
  • Chain 'M':
    Compound: Photosystem II reaction center protein M
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pj0m_
  • Chain 'O':
    Compound: Photosystem II manganese-stabilizing polypeptide
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pj0o_
  • Chain 'R':
    Compound: Photosystem II protein Y
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: Photosystem II reaction center protein T
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pj0t_
  • Chain 'U':
    Compound: Photosystem II 12 kDa extrinsic protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pj0u_
  • Chain 'V':
    Compound: cytochrome c-550
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pj0v_
  • Chain 'X':
    Compound: Photosystem II reaction center X protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pj0x_
  • Chain 'Y':
    Compound: Photosystem II reaction center protein ycf12
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: Photosystem II reaction center protein Z
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pj0z_
  • Chain 'a':
    Compound: photosystem q(b) protein 1
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'b':
    Compound: CP47 protein
    Species: Thermosynechococcus elongatus [TaxId:146786]
    Database cross-references and differences (RAF-indexed):
  • Chain 'c':
    Compound: Photosystem II CP43 protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'd':
    Compound: Photosystem II D2 protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'e':
    Compound: Cytochrome b559 subunit alpha
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'f':
    Compound: Cytochrome b559 subunit beta
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'h':
    Compound: Photosystem II reaction center protein H
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'i':
    Compound: Photosystem II reaction center protein I
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'j':
    Compound: Photosystem II reaction center protein J
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'k':
    Compound: Photosystem II reaction center protein K
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'l':
    Compound: Photosystem II reaction center protein L
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'm':
    Compound: Photosystem II reaction center protein M
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'o':
    Compound: Photosystem II manganese-stabilizing polypeptide
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'r':
    Compound: Photosystem II protein Y
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 't':
    Compound: Photosystem II reaction center protein T
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'u':
    Compound: Photosystem II 12 kDa extrinsic protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'v':
    Compound: cytochrome c-550
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'x':
    Compound: Photosystem II reaction center X protein
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'y':
    Compound: Photosystem II reaction center protein ycf12
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Chain 'z':
    Compound: Photosystem II reaction center protein Z
    Species: THERMOSYNECHOCOCCUS ELONGATUS [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: OEX, FE, LMG, CL, CLA, BCR, PL9, SQD, LHG, SO4, BCT, UNL, DGD, PHO, HEM, HEC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4pj0A (A:)
mtttlqrresanlwerfcnwvtstdnrlyvgwfgvimiptllaaticfviafiaappvdi
dgirepvsgsllygnniitgavvpssnaiglhfypiweaasldewlynggpyqliifhfl
lgascymgrqwelsyrlgmrpwicvaysaplasafavfliypigqgsfsdgmplgisgtf
nfmivfqaehnilmhpfhqlgvagvfggalfcamhgslvtsslirettetesanygykfg
qeeetynivaahgyfgrlifqyasfnnsrslhfflaawpvvgvwftalgistmafnlngf
nfnhsvidakgnvintwadiinranlgmevmhernahnfpldla

    Sequence, based on observed residues (ATOM records): (download) 
    >4pj0A (A:)
nlwerfcnwvtstdnrlyvgwfgvimiptllaaticfviafiaappvdidgirepvsgsl
lygnniitgavvpssnaiglhfypiweaasldewlynggpyqliifhfllgascymgrqw
elsyrlgmrpwicvaysaplasafavfliypigqgsfsdgmplgisgtfnfmivfqaehn
ilmhpfhqlgvagvfggalfcamhgslvtsslirettetesanygykfgqeeetynivaa
hgyfgrlifqyasfnnsrslhfflaawpvvgvwftalgistmafnlngfnfnhsvidakg
nvintwadiinranlgmevmhernahnfpldla

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4pj0B (B:)
mglpwyrvhtvlindpgrliaahlmhtalvagwagsmalyelatfdpsdpvlnpmwrqgm
fvlpfmarlgvtgswsgwsitgetgidpgfwsfegvalahivlsgllflaacwhwvywdl
elfrdprtgepaldlpkmfgihlflagllcfgfgafhltglfgpgmwvsdpygltgsvqp
vapewgpdgfnpynpggvvahhiaagivgiiaglfhilvrppqrlykalrmgnietvlss
siaavffaafvvagtmwygsattpielfgptryqwdssyfqqeinrrvqaslasgatlee
awsaipeklafydyignnpakgglfrtgpmnkgdgiaqawkghavfrnkegeelfvrrmp
affesfpviltdkngvvkadipfrraeskysfeqqgvtvsfyggelngqtftdpptvksy
arkaifgeifefdtetlnsdgifrtsprgwftfahavfallfffghiwhgartlfrdvfs
gidpelspeqvewgfyqkvgdvttrrkeav

    Sequence, based on observed residues (ATOM records): (download) 
    >4pj0B (B:)
glpwyrvhtvlindpgrliaahlmhtalvagwagsmalyelatfdpsdpvlnpmwrqgmf
vlpfmarlgvtgswsgwsitgetgidpgfwsfegvalahivlsgllflaacwhwvywdle
lfrdprtgepaldlpkmfgihlflagllcfgfgafhltglfgpgmwvsdpygltgsvqpv
apewgpdgfnpynpggvvahhiaagivgiiaglfhilvrppqrlykalrmgnietvlsss
iaavffaafvvagtmwygsattpielfgptryqwdssyfqqeinrrvqaslasgatleea
wsaipeklafydyignnpakgglfrtgpmnkgdgiaqawkghavfrnkegeelfvrrmpa
ffesfpviltdkngvvkadipfrraeskysfeqqgvtvsfyggelngqtftdpptvksya
rkaifgeifefdtetlnsdgifrtsprgwftfahavfallfffghiwhgartlfrdvfsg
idpelspeqvewgfyqkvgdvttrr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4pj0C (C:)
mvtlssnsifatnrdqessgfawwagnarlinlsgkllgahvahaglivfwagamtlfel
ahfipekpmyeqgliliphiatlgwgvgpggevvdtfpffvvgvvhlissavlgfggvyh
airgpetleeyssffgydwkdknkmttilgfhlivlgigalllvakamffgglydtwapg
ggdvrvitnptldprvifgyllkspfggegwivsvnnledvvgghiwigliciaggiwhi
lttpfgwarrafiwsgeaylsyslgalsmmgfiatcfvwfnntvypsefygptgpeasqa
qamtflirdqklganvgsaqgptglgkylmrsptgeiifggetmrfwdfrgpwleplrgp
ngldlnkikndiqpwqerraaeymthaplgslnsvggvateinsvnfvsprswlatshfv
laffflvghlwhagraraaaagfekgidresepvlsmpsld

    Sequence, based on observed residues (ATOM records): (download) 
    >4pj0C (C:)
rdqessgfawwagnarlinlsgkllgahvahaglivfwagamtlfelahfipekpmyeqg
liliphiatlgwgvgpggevvdtfpffvvgvvhlissavlgfggvyhairgpetleeyss
ffgydwkdknkmttilgfhlivlgigalllvakamffgglydtwapgggdvrvitnptld
prvifgyllkspfggegwivsvnnledvvgghiwigliciaggiwhilttpfgwarrafi
wsgeaylsyslgalsmmgfiatcfvwfnntvypsefygptgpeasqaqamtflirdqklg
anvgsaqgptglgkylmrsptgeiifggetmrfwdfrgpwleplrgpngldlnkikndiq
pwqerraaeymthaplgslnsvggvateinsvnfvsprswlatshfvlaffflvghlwha
graraaaagfekgidresepvlsmpsld

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4pj0D (D:)
mtiaigrapaergwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswyt
hglassylegcnfltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgaf
gligfmlrqfeiarlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifr
fllffqgfhnwtlnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqa
eetysmvtanrfwsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfis
qeiraaedpefetfytknlllnegirawmapqdqphenfvfpeevlprgnal

    Sequence, based on observed residues (ATOM records): (download) 
    >4pj0D (D:)
gwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswythglassylegcn
fltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgafgligfmlrqfei
arlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifrfllffqgfhnwt
lnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqaeetysmvtanrf
wsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfisqeiraaedpefe
tfytknlllnegirawmapqdqphenfvfpeevlprgnal

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4pj0E (E:)
magttgerpfsdiitsvrywvihsitipalfiagwlfvstglaydvfgtprpdsyyaqeq
rsiplvtdrfeakqqvetfleqlk

    Sequence, based on observed residues (ATOM records): (download) 
    >4pj0E (E:)
agttgerpfsdiitsvrywvihsitipalfiagwlfvstglaydvfgtprpdsyyaqeqr
siplvtdrfeakqqvetfleql

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4pj0F (F:)
mtsntpnqepvsypiftvrwvavhtlavptifflgaiaamqfiqr

    Sequence, based on observed residues (ATOM records): (download) 
    >4pj0F (F:)
ypiftvrwvavhtlavptifflgaiaamqfiqr

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4pj0H (H:)
marrtwlgdilrplnseygkvapgwgttplmavfmglflvflliileiynstlildgvnv
swkalg

    Sequence, based on observed residues (ATOM records): (download) 
    >4pj0H (H:)
arrtwlgdilrplnseygkvapgwgttplmavfmglflvflliileiynstlildgvnvs
wka

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >4pj0I (I:)
metlkitvyivvtffvllfvfgflsgdparnpkrkdle

    Sequence, based on observed residues (ATOM records): (download) 
    >4pj0I (I:)
metlkitvyivvtffvllfvfgflsgdparnpk

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >4pj0J (J:)
mmseggriplwivatvagmgvivivglffygayaglgssl

    Sequence, based on observed residues (ATOM records): (download) 
    >4pj0J (J:)
riplwivatvagmgvivivglffygayaglgssl

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >4pj0K (K:)
midalvlvaklpeayaifdplvdvlpvipvlflalafvwqaavgfr

    Sequence, based on observed residues (ATOM records): (download) 
    >4pj0K (K:)
lpeayaifdplvdvlpvipvlflalafvwqaavgfr

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >4pj0L (L:)
mepnpnrqpvelnrtslylglllilvlallfssyffn

    Sequence, based on observed residues (ATOM records): (download) 
    >4pj0L (L:)
epnpnrqpvelnrtslylglllilvlallfssyffn

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >4pj0M (M:)
mevnqlgliatalfvlvpsvfliilyvqtesqqkss

    Sequence, based on observed residues (ATOM records): (download) 
    >4pj0M (M:)
mevnqlgliatalfvlvpsvfliilyvqtesq

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >4pj0O (O:)
mkyrilmatllavclgifslsapafaakqtltyddivgtglankcptlddtargaypids
sqtyriarlclqpttflvkeepknkrqeaefvptklvtrettsldqiqgelkvnsdgslt
fveedgidfqpvtvqmaggeripllftvknlvastqpnvtsittstdfkgefnvpsyrta
nfldpkgrglasgydsaialpqakeeelaranvkrfsltkgqislnvakvdgrtgeiagt
feseqlsdddmgahephevkiqgvfyasiepa

    Sequence, based on observed residues (ATOM records): (download) 
    >4pj0O (O:)
tltyddivgtglankcptlddtargaypidssqtyriarlclqpttflvkeepknkrqea
efvptklvtrettsldqiqgelkvnsdgsltfveedgidfqpvtvqmaggeripllftvk
nlvastqpnvtsittstdfkgefnvpsyrtanfldpkgrglasgydsaialpqakeeela
ranvkrfsltkgqislnvakvdgrtgeiagtfeseqlsdddmgahephevkiqgvfyasi
ep

  • Chain 'R':
    No sequence available.

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >4pj0T (T:)
metityvfifaciialfffaiffreppritkk

    Sequence, based on observed residues (ATOM records): (download) 
    >4pj0T (T:)
metityvfifaciialfffaiffreppri

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >4pj0U (U:)
mqrlgrwlalayfvgvsllgwinwsaptlaatasteeelvnvvdeklgtaygekidlnnt
niaafiqyrglyptlaklivknapyesvedvlnipglterqkqilrenlehftvteveta
lveggdrynnglyk

    Sequence, based on observed residues (ATOM records): (download) 
    >4pj0U (U:)
lvnvvdeklgtaygekidlnntniaafiqyrglyptlaklivknapyesvedvlnipglt
erqkqilrenlehftvtevetalveggdrynnglyk

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >4pj0V (V:)
mlkkcvwlavalclclwqftmgtalaaeltpevltvplnsegktitltekqylegkrlfq
yacaschvggitktnpsldlrtetlalatpprdnieglvdymknpttydgeqeiaevhps
lrsadifpkmrnltekdlvaiaghilvepkilgdkwgggkvyy

    Sequence, based on observed residues (ATOM records): (download) 
    >4pj0V (V:)
aeltpevltvplnsegktitltekqylegkrlfqyacaschvggitktnpsldlrtetla
latpprdnieglvdymknpttydgeqeiaevhpslrsadifpkmrnltekdlvaiaghil
vepkilgdkwgggkvyy

  • Chain 'X':
    Sequence, based on SEQRES records: (download) 
    >4pj0X (X:)
mtitpslkgffigllsgavvlgltfavliaisqidkvqrsl

    Sequence, based on observed residues (ATOM records): (download) 
    >4pj0X (X:)
titpslkgffigllsgavvlgltfavliaisqidkvq

  • Chain 'Y':
    No sequence available.

  • Chain 'Z':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4pj0Z (Z:)
mtilfqlalaalvilsfvmvigvpvayaspqdwdrskqliflgsglwialvlvvgvlnff
vv

  • Chain 'a':
    No sequence available.

  • Chain 'b':
    No sequence available.

  • Chain 'c':
    No sequence available.

  • Chain 'd':
    No sequence available.

  • Chain 'e':
    No sequence available.

  • Chain 'f':
    No sequence available.

  • Chain 'h':
    No sequence available.

  • Chain 'i':
    No sequence available.

  • Chain 'j':
    No sequence available.

  • Chain 'k':
    No sequence available.

  • Chain 'l':
    No sequence available.

  • Chain 'm':
    No sequence available.

  • Chain 'o':
    No sequence available.

  • Chain 'r':
    No sequence available.

  • Chain 't':
    No sequence available.

  • Chain 'u':
    No sequence available.

  • Chain 'v':
    No sequence available.

  • Chain 'x':
    No sequence available.

  • Chain 'y':
    No sequence available.

  • Chain 'z':
    No sequence available.