PDB entry 4ph0

View 4ph0 on RCSB PDB site
Description: capsid protein from bovine leukemia virus
Class: viral protein
Keywords: retroviral capsid, all alpha, VIRAL PROTEIN
Deposited on 2014-05-03, released 2015-06-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-01-08, with a file datestamp of 2020-01-03.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: BLV capsid
    Species: Bovine leukemia virus [TaxId:11901]
    Gene: gag-pro-pol
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ph0a1, d4ph0a2
  • Chain 'B':
    Compound: BLV capsid
    Species: Bovine leukemia virus [TaxId:11901]
    Gene: gag-pro-pol
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ph0b1, d4ph0b2
  • Chain 'C':
    Compound: BLV capsid
    Species: Bovine leukemia virus [TaxId:11901]
    Gene: gag-pro-pol
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ph0c1, d4ph0c2
  • Chain 'D':
    Compound: BLV capsid
    Species: Bovine leukemia virus [TaxId:11901]
    Gene: gag-pro-pol
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ph0d1, d4ph0d2
  • Chain 'E':
    Compound: BLV capsid
    Species: Bovine leukemia virus [TaxId:11901]
    Gene: gag-pro-pol
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ph0e1, d4ph0e2
  • Chain 'F':
    Compound: BLV capsid
    Species: Bovine leukemia virus [TaxId:11901]
    Gene: gag-pro-pol
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ph0f1, d4ph0f2

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ph0A (A:)
piisegnrnrhrawalrelqdikkeienkapgsqvwiqtlrlailqadptpadleqlcqy
iaspvdqtahmtsltaaiaaaeaantlqgfnpqngtltqqsaqpnagdlrsqyqnlwlqa
wknlptrpsvqpwstivqgpaesyvefvnrlqisladnlpdgvpkepiidslsyananke
cqqilqgrglvaapvgqklqacahwapkvkqpavl

    Sequence, based on observed residues (ATOM records): (download) 
    >4ph0A (A:)
piisegnrnrhrawalrelqdikkeienkapgsqvwiqtlrlailqadptpadleqlcqy
iaspvdqtahmtsltaaiaaaeaantlqgfnpqngtltqqsaqpnagdlrsqyqnlwlqa
wknlptpwstivqgpaesyvefvnrlqisladnlpdgvpkepiidslsyanankecqqil
qgrglvaapvgqklqacahwa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ph0B (B:)
piisegnrnrhrawalrelqdikkeienkapgsqvwiqtlrlailqadptpadleqlcqy
iaspvdqtahmtsltaaiaaaeaantlqgfnpqngtltqqsaqpnagdlrsqyqnlwlqa
wknlptrpsvqpwstivqgpaesyvefvnrlqisladnlpdgvpkepiidslsyananke
cqqilqgrglvaapvgqklqacahwapkvkqpavl

    Sequence, based on observed residues (ATOM records): (download) 
    >4ph0B (B:)
piisenrhrawalrelqdikkeienkapgsqvwiqtlrlailqadptpadleqlcqyias
pvdqtahmtsltaaiaaaeaantlqgfnpqngtltqqsaqpnagdlrsqyqnlwlqawkn
lwstivqgpaesyvefvnrlqisladnlkepiidslsyanankecqqilqgrglvaapvg
qklqacah

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ph0C (C:)
piisegnrnrhrawalrelqdikkeienkapgsqvwiqtlrlailqadptpadleqlcqy
iaspvdqtahmtsltaaiaaaeaantlqgfnpqngtltqqsaqpnagdlrsqyqnlwlqa
wknlptrpsvqpwstivqgpaesyvefvnrlqisladnlpdgvpkepiidslsyananke
cqqilqgrglvaapvgqklqacahwapkvkqpavl

    Sequence, based on observed residues (ATOM records): (download) 
    >4ph0C (C:)
piisegnrhrawalrelqdikkeienkapgsqvwiqtlrlailqadptpadleqlcqyia
spvdqtahmtsltaaiaaaeaantlqgfnpqngtltqqsaqpnagdlrsqyqnlwlqawk
nlptvqpwstivqgpaesyvefvnrlqisladnlpdgvpkepiidslsyanankecqqil
qgrglvaapvgqklqacah

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4ph0D (D:)
piisegnrnrhrawalrelqdikkeienkapgsqvwiqtlrlailqadptpadleqlcqy
iaspvdqtahmtsltaaiaaaeaantlqgfnpqngtltqqsaqpnagdlrsqyqnlwlqa
wknlptrpsvqpwstivqgpaesyvefvnrlqisladnlpdgvpkepiidslsyananke
cqqilqgrglvaapvgqklqacahwapkvkqpavl

    Sequence, based on observed residues (ATOM records): (download) 
    >4ph0D (D:)
piisegnrnrhrawalrelqdikkeienkapgsqvwiqtlrlailqadptpadleqlcqy
iaspvdqtahmtsltaaiaaaeaantlqgfnpqngtltqqsaqpnagdlrsqyqnlwlqa
wknlpwstivqgpaesyvefvnrlqisladnlpdgvpkepiidslsyanankecqqilqg
rglvaapvgqklqacahw

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4ph0E (E:)
piisegnrnrhrawalrelqdikkeienkapgsqvwiqtlrlailqadptpadleqlcqy
iaspvdqtahmtsltaaiaaaeaantlqgfnpqngtltqqsaqpnagdlrsqyqnlwlqa
wknlptrpsvqpwstivqgpaesyvefvnrlqisladnlpdgvpkepiidslsyananke
cqqilqgrglvaapvgqklqacahwapkvkqpavl

    Sequence, based on observed residues (ATOM records): (download) 
    >4ph0E (E:)
piisnrhrawalrelqdikkeienkapgsqvwiqtlrlailqadptpadleqlcqyiasp
vdqtahmtsltaaiaaaeaantlqgfnpqngtltqqsaqpnagdlrsqyqnlwlqawknw
stivqgpaesyvefvnrlqisladnlpdgvpkepiidslsyanankecqqilqgrglvaa
pvgqklqacahwa

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4ph0F (F:)
piisegnrnrhrawalrelqdikkeienkapgsqvwiqtlrlailqadptpadleqlcqy
iaspvdqtahmtsltaaiaaaeaantlqgfnpqngtltqqsaqpnagdlrsqyqnlwlqa
wknlptrpsvqpwstivqgpaesyvefvnrlqisladnlpdgvpkepiidslsyananke
cqqilqgrglvaapvgqklqacahwapkvkqpavl

    Sequence, based on observed residues (ATOM records): (download) 
    >4ph0F (F:)
piisrawalrelqdikkeienkapgsqvwiqtlrlailqadptpadleqlcqyiaspvdq
tahmtsltaaiaaaeaantlqgfnpqngtltqqsaqpnagdlrsqyqnlwlqawknlptr
psvqpwstivqgpaesyvefvnrlqisladnlpdgvpkepiidslsyanankecqqilqg
rglvaapvgqklqacahwa