PDB entry 4pge

View 4pge on RCSB PDB site
Description: mhc class i in complex with modified sendai virus nucleoprotein peptide fapgnypaw
Deposited on 2014-05-01, released 2015-01-07
The last revision was dated 2020-01-08, with a file datestamp of 2020-01-03.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: h-2 class I histocompatibility antigen, k-b alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-K1, H2-K
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01887 (1-99)
      • variant (85)
  • Chain 'C':
    Compound: sendai virus nucleoprotein
    Species: SENDAI VIRUS, synthetic [TaxId:11191]
    Database cross-references and differences (RAF-indexed):
    • PDB 4PGE (0-8)
  • Heterogens: GOL, MPD, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4pgeA (A:)
mgsshhhhhhssglvprgshmledpmgphslryfvtavsrpglgeprymevgyvddtefv
rfdsdaenpryeprarwmeqegpeyweretqkakgneqsfrvdlrtllgyynqskggsht
iqvisgcevgsdgrllrgyqqyaydgcdyialnedlktwtaadmaalitkhkweqageae
rlraylegtcvewlrrylkngnatllrtdspkahvthhsrpedkvtlrcwalgfypadit
ltwqlngeeliqdmelvetrpagdgtfqkwasvvvplgkeqyytchvyhqglpepltlrw
eppp

    Sequence, based on observed residues (ATOM records):
    >4pgeA (A:)
gphslryfvtavsrpglgeprymevgyvddtefvrfdsdaenpryeprarwmeqegpeyw
eretqkakgneqsfrvdlrtllgyynqskggshtiqvisgcevgsdgrllrgyqqyaydg
cdyialnedlktwtaadmaalitkhkweqageaerlraylegtcvewlrrylkngnatll
rtdspkahvthhsrpedkvtlrcwalgfypaditltwqlngeeliqdmelvetrpagdgt
fqkwasvvvplgkeqyytchvyhqglpepltlrw

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4pgeB (B:)
miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm

    Sequence, based on observed residues (ATOM records):
    >4pgeB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >4pgeC (C:)
fapgnypaw