SCOPe 2.08: Structural Classification of Proteins

PDB entry 4pgb

View 4pgb on RCSB PDB site
Description: mhc class i in complex with modified sendai virus nucleoprotein peptide fapgnwpal
Deposited on 2014-05-01, released 2015-01-07
The last revision was dated 2020-01-08, with a file datestamp of 2020-01-03.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: h-2 class I histocompatibility antigen, k-b alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-K1, H2-K
Database cross-references and differences (RAF-indexed):
- Uniprot P01901 (26-303)
Chain 'B':
Compound: Beta-2-microglobulin
Species: Mus musculus [TaxId:10090]
Gene: B2M
Database cross-references and differences (RAF-indexed):
- Uniprot P01887 (1-99)
  - conflict (85)
Chain 'C':
Compound: sendai virus nucleoprotein
Species: SENDAI VIRUS, synthetic [TaxId:11191]
Database cross-references and differences (RAF-indexed):
- PDB 4PGB (0-8)
Chain 'D':
Compound: h-2 class I histocompatibility antigen, k-b alpha chain
Species: Mus musculus [TaxId:10090]
Gene: H2-K1, H2-K
Database cross-references and differences (RAF-indexed):
- Uniprot P01901 (26-303)
Chain 'E':
Compound: Beta-2-microglobulin
Species: Mus musculus [TaxId:10090]
Gene: B2M
Database cross-references and differences (RAF-indexed):
- Uniprot P01887 (1-99)
  - conflict (85)
Chain 'F':
Compound: sendai virus nucleoprotein
Species: SENDAI VIRUS, synthetic [TaxId:11191]
Database cross-references and differences (RAF-indexed):
- PDB 4PGB (0-8)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>4pgbA (A:)
mgsshhhhhhssglvprgshmledpmgphslryfvtavsrpglgeprymevgyvddtefv
rfdsdaenpryeprarwmeqegpeyweretqkakgneqsfrvdlrtllgyynqskggsht
iqvisgcevgsdgrllrgyqqyaydgcdyialnedlktwtaadmaalitkhkweqageae
rlraylegtcvewlrrylkngnatllrtdspkahvthhsrpedkvtlrcwalgfypadit
ltwqlngeeliqdmelvetrpagdgtfqkwasvvvplgkeqyytchvyhqglpepltlrw
eppp

Sequence, based on observed residues (ATOM records):

>4pgbA (A:)
gphslryfvtavsrpglgeprymevgyvddtefvrfdsdaenpryeprarwmeqegpeyw
eretqkakgneqsfrvdlrtllgyynqskggshtiqvisgcevgsdgrllrgyqqyaydg
cdyialnedlktwtaadmaalitkhkweqageaerlraylegtcvewlrrylkngnatll
rtdspkahvthhsrpedkvtlrcwalgfypaditltwqlngeeliqdmelvetrpagdgt
fqkwasvvvplgkeqyytchvyhqglpepltlrweppp

Chain 'B':
Sequence, based on SEQRES records:

>4pgbB (B:)
miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm

Sequence, based on observed residues (ATOM records):

>4pgbB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm

Chain 'C':
Sequence; same for both SEQRES and ATOM records:
```
>4pgbC (C:)
fapgnwpal
```

Chain 'D':
Sequence, based on SEQRES records:

>4pgbD (D:)
mgsshhhhhhssglvprgshmledpmgphslryfvtavsrpglgeprymevgyvddtefv
rfdsdaenpryeprarwmeqegpeyweretqkakgneqsfrvdlrtllgyynqskggsht
iqvisgcevgsdgrllrgyqqyaydgcdyialnedlktwtaadmaalitkhkweqageae
rlraylegtcvewlrrylkngnatllrtdspkahvthhsrpedkvtlrcwalgfypadit
ltwqlngeeliqdmelvetrpagdgtfqkwasvvvplgkeqyytchvyhqglpepltlrw
eppp

Sequence, based on observed residues (ATOM records):

>4pgbD (D:)
gphslryfvtavsrpglgeprymevgyvddtefvrfdsdaenpryeprarwmeqegpeyw
eretqkakgneqsfrvdlrtllgyynqskggshtiqvisgcevgsdgrllrgyqqyaydg
cdyialnedlktwtaadmaalitkhkweqageaerlraylegtcvewlrrylkngnatll
rtdspkahvthhsrpedkvtlrcwalgfypaditltwqlngeeliqdmelvetrpagdgt
fqkwasvvvplgkeqyytchvyhqglpepltlrweppp

Chain 'E':
Sequence, based on SEQRES records:

>4pgbE (E:)
miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm

Sequence, based on observed residues (ATOM records):

>4pgbE (E:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm

Chain 'F':
Sequence; same for both SEQRES and ATOM records:
```
>4pgbF (F:)
fapgnwpal
```