PDB entry 4pf6

View 4pf6 on RCSB PDB site
Description: crystal structure of a trap periplasmic solute binding protein from roseobacter denitrificans (rd1_0742, target efi-510239) with bound 3-deoxy-d-manno-oct-2-ulosonic acid (kdo)
Class: transport protein
Keywords: TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, EFI, Structural Genomics, TRANSPORT PROTEIN
Deposited on 2014-04-28, released 2014-05-14
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-10-07, with a file datestamp of 2015-10-02.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: C4-dicarboxylate-binding protein
    Species: Roseobacter denitrificans [TaxId:375451]
    Gene: RD1_0742
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4pf6a_
  • Heterogens: KDO, PGE, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4pf6A (A:)
mhhhhhhssgvdlgtenlyfqsmqdkitlrmstpasetdqrsvalaevfapavagfatyq
phynasliaqnseleaiasgdlemsiasaqelaqffpefsifatgyvhqsaehqvavfnd
plmdpfkktvedelgikllsvmylgqrhvnlrqtkeeltvttpadlagvnlrmpgtdawq
flgkalganptpmafteiytalqtgsvdgqdnplptvvdakfyevtnqvaltghlvdlny
iafskavwdglspeqqeivqtaadaaaqsgrekqlakeqelvsfleeqgmeiyapdldaf
rthvqeqyvgsefaaswpegvldkinalgn

    Sequence, based on observed residues (ATOM records): (download) 
    >4pf6A (A:)
dkitlrmstpasetdqrsvalaevfapavagfatyqphynasliaqnseleaiasgdlem
siasaqelaqffpefsifatgyvhqsaehqvavfndplmdpfkktvedelgikllsvmyl
gqrhvnlrqtkeeltvttpadlagvnlrmpgtdawqflgkalganptpmafteiytalqt
gsvdgqdnplptvvdakfyevtnqvaltghlvdlnyiafskavwdglspeqqeivqtaad
aaaqsgrekqlakeqelvsfleeqgmeiyapdldafrthvqeqyvgsefaaswpegvldk
inalg