PDB entry 4pdw

View 4pdw on RCSB PDB site
Description: A benzonitrile analogue inhibits rhinovirus replication
Class: virus
Keywords: benzonitrile inhibitor, virus
Deposited on 2014-04-22, released 2014-07-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-12-10, with a file datestamp of 2014-12-05.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.2
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Genome polyprotein
    Species: Human rhinovirus 14 [TaxId:12131]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pdwa_
  • Chain 'B':
    Compound: Genome polyprotein
    Species: Human rhinovirus 14 [TaxId:12131]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Genome polyprotein
    Species: Human rhinovirus 14 [TaxId:12131]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4pdwc_
  • Chain 'D':
    Compound: Capsid protein VP4/VP2
    Species: Rhinovirus B [TaxId:147712]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GOL, 2XK, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4pdwA (A:)
glgdeleevivektkqtvasissgpkhtqkvpiltanetgatmpvlpsdsietrttymhf
ngsetdvecflgraacvhvteiqnkdatgidnhreaklfndwkinlsslvqlrkklelft
yvrfdseytilatasqpdsanyssnlvvqamyvppgapnpkewddytwqsasnpsvffkv
gdtsrfsvpyvglasayncfydgyshddaetqygitvlnhmgsmafrivnehdehktlvk
irvyhrakhveawiprapralpytsigrtnypkntepvikkrkgdiksy

    Sequence, based on observed residues (ATOM records): (download) 
    >4pdwA (A:)
qtvasissgpkhtqkvpiltanetgatmpvlpsdsietrttymhfngsetdvecflgraa
cvhvteiqnkdatgidnhreaklfndwkinlsslvqlrkklelftyvrfdseytilatas
qpdsanyssnlvvqamyvppgapnpkewddytwqsasnpsvffkvgdtsrfsvpyvglas
ayncfydgyshddaetqygitvlnhmgsmafrivnehdehktlvkirvyhrakhveawip
rapralpytsigrtnypkntepvikkrkgdiksy

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4pdwC (C:)
glptttlpgsgqflttddrqspsalpnyeptprihipgkvhnlleiiqvdtlipmnntht
kdevnsyliplnanrqneqvfgtnlfigdgvfkttllgeivqyythwsgslrfslmytgp
alssaklilaytppgargpqdrreamlgthvvwdiglqstivmtipwtsgvqfrytdpdt
ytsagflscwyqtslilppettgqvyllsfisacpdfklrlmkdtqtisqtvalte

    Sequence, based on observed residues (ATOM records): (download) 
    >4pdwC (C:)
glptttlpgsgqflttddrqspsalpnyeptprihipgkvhnlleiiqvdtlipmnntht
kdevnsyliplnanrqneqvfgtnlfigdgvfkttllgeivqyythwsgslrfslmytgp
alssaklilaytppgargpqdrreamlgthvvwdiglqstivmtipwtsgvqfrytdpdt
ytsagflscwyqtslilppettgqvyllsfisacpdfklrlmkdtqtisqt

  • Chain 'D':
    No sequence available.