PDB entry 4pdd

View 4pdd on RCSB PDB site
Description: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM POLAROMONAS SP JS666 (Bpro_0088, TARGET EFI-510167) BOUND TO D-ERYTHRONATE
Class: solute-binding protein
Keywords: TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, EFI, Structural Genomics, SOLUTE-BINDING PROTEIN
Deposited on 2014-04-18, released 2014-05-14
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-25, with a file datestamp of 2019-12-20.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: TRAP dicarboxylate transporter, DctP subunit
    Species: Polaromonas sp. JS666 [TaxId:296591]
    Gene: Bpro_0088
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q12HD7 (0-300)
      • expression tag (301-302)
    Domains in SCOPe 2.08: d4pdda1, d4pdda2
  • Chain 'B':
    Compound: TRAP dicarboxylate transporter, DctP subunit
    Species: Polaromonas sp. JS666 [TaxId:296591]
    Gene: Bpro_0088
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q12HD7 (0-300)
      • expression tag (301-302)
    Domains in SCOPe 2.08: d4pddb1, d4pddb2
  • Chain 'C':
    Compound: TRAP dicarboxylate transporter, DctP subunit
    Species: Polaromonas sp. JS666 [TaxId:296591]
    Gene: Bpro_0088
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q12HD7 (0-300)
      • expression tag (301-302)
    Domains in SCOPe 2.08: d4pddc1, d4pddc2
  • Heterogens: EAX, MLA, FMT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4pddA (A:)
etilkigytppkdshygvgattfcdevekgtqerykcqhfpssalggeremiesvqlgtq
dlvntstgplgnfvpetrivdipflfrdyeharkvmdgaigqdllkkmqakgliglawte
ngfrhmtnskrpilqasdaaglkvrtmenkvhmdgyktfgllptpmafpelftalqqgtv
dgqenpipvilsskfsqvqkhlsltghvyspavlilssrvwdklseadkkvfvaaaqkat
vaqrkrvnddeangitqlkkdgmqvvekvdgesfrkavapayagfakefgaeriaaiqav
kae

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4pddB (B:)
etilkigytppkdshygvgattfcdevekgtqerykcqhfpssalggeremiesvqlgtq
dlvntstgplgnfvpetrivdipflfrdyeharkvmdgaigqdllkkmqakgliglawte
ngfrhmtnskrpilqasdaaglkvrtmenkvhmdgyktfgllptpmafpelftalqqgtv
dgqenpipvilsskfsqvqkhlsltghvyspavlilssrvwdklseadkkvfvaaaqkat
vaqrkrvnddeangitqlkkdgmqvvekvdgesfrkavapayagfakefgaeriaaiqav
kae

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4pddC (C:)
etilkigytppkdshygvgattfcdevekgtqerykcqhfpssalggeremiesvqlgtq
dlvntstgplgnfvpetrivdipflfrdyeharkvmdgaigqdllkkmqakgliglawte
ngfrhmtnskrpilqasdaaglkvrtmenkvhmdgyktfgllptpmafpelftalqqgtv
dgqenpipvilsskfsqvqkhlsltghvyspavlilssrvwdklseadkkvfvaaaqkat
vaqrkrvnddeangitqlkkdgmqvvekvdgesfrkavapayagfakefgaeriaaiqav
kae