PDB entry 4pd9

View 4pd9 on RCSB PDB site
Description: structure of vccnt-7c8c bound to adenosine
Deposited on 2014-04-17, released 2014-08-13
The last revision was dated 2019-12-25, with a file datestamp of 2019-12-20.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NupC family protein
    Species: Vibrio cholerae serotype O1 [TaxId:243277]
    Gene: VC_2352
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KPL5
      • engineered mutation (12-13)
  • Heterogens: ADN, NA, DMU, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4pd9A (A:)
gpavprmslfmsccgmavllgiavllssnrkainlrtvggafaiqfslgafilyvpwgqe
llrgfsdavsnvinygndgtsflfgglvsgkmfevfggggfifafrvlptliffsalisv
lyylgvmqwvirilggglqkalgtsraesmsaaanifvgqteaplvvrpfvpkmtqself
avmcgglasiaggvlagyasmgvkieylvaasfmaapggllfaklmmpetekpqdnedit
ldggddkpanvidaaaggasaglqlalnvgamliafiglialingmlggiggwfgmpelk
lemllgwlfaplafligvpwneatvagefiglktvanefvaysqfapylteaapvvlsek
tkaiisfalcgfanlssiaillgglgslapkrrgdiarmgvkaviagtlsnlmaatiagf
flsf

    Sequence, based on observed residues (ATOM records):
    >4pd9A (A:)
slfmsccgmavllgiavllssnrkainlrtvggafaiqfslgafilyvpwgqellrgfsd
avsnvinygndgtsflfgglvsgkmfevfggggfifafrvlptliffsalisvlyylgvm
qwvirilggglqkalgtsraesmsaaanifvgqteaplvvrpfvpkmtqselfavmcggl
asiaggvlagyasmgvkieylvaasfmaapggllfaklmmpetekpqdkpanvidaaagg
asaglqlalnvgamliafiglialingmlggiggwfgmpelklemllgwlfaplafligv
pwneatvagefiglktvanefvaysqfapylteaapvvlsektkaiisfalcgfanlssi
aillgglgslapkrrgdiarmgvkaviagtlsnlmaatiagffl