PDB entry 4pd6

View 4pd6 on RCSB PDB site
Description: crystal structure of vccnt-7c8c bound to uridine
Deposited on 2014-04-17, released 2014-08-13
The last revision was dated 2019-12-25, with a file datestamp of 2019-12-20.
Experiment type: XRAY
Resolution: 2.08 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NupC family protein
    Species: Vibrio cholerae serotype O1 [TaxId:243277]
    Gene: VC_2352
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KPL5
      • engineered mutation (12-13)
  • Heterogens: URI, NA, DMU, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4pd6A (A:)
gpavprmslfmsccgmavllgiavllssnrkainlrtvggafaiqfslgafilyvpwgqe
llrgfsdavsnvinygndgtsflfgglvsgkmfevfggggfifafrvlptliffsalisv
lyylgvmqwvirilggglqkalgtsraesmsaaanifvgqteaplvvrpfvpkmtqself
avmcgglasiaggvlagyasmgvkieylvaasfmaapggllfaklmmpetekpqdnedit
ldggddkpanvidaaaggasaglqlalnvgamliafiglialingmlggiggwfgmpelk
lemllgwlfaplafligvpwneatvagefiglktvanefvaysqfapylteaapvvlsek
tkaiisfalcgfanlssiaillgglgslapkrrgdiarmgvkaviagtlsnlmaatiagf
flsf

    Sequence, based on observed residues (ATOM records):
    >4pd6A (A:)
msccgmavllgiavllssnrkainlrtvggafaiqfslgafilyvpwgqellrgfsdavs
nvinygndgtsflfgglvsgkmfevfggggfifafrvlptliffsalisvlyylgvmqwv
irilggglqkalgtsraesmsaaanifvgqteaplvvrpfvpkmtqselfavmcgglasi
aggvlagyasmgvkieylvaasfmaapggllfaklmmpetekpqdkpanvidaaaggasa
glqlalnvgamliafiglialingmlggiggwfgmpelklemllgwlfaplafligvpwn
eatvagefiglktvanefvaysqfapylteaapvvlsektkaiisfalcgfanlssiail
lgglgslapkrrgdiarmgvkaviagtlsnlmaatiagffl