PDB entry 4pd1

View 4pd1 on RCSB PDB site
Description: structure of gephyrin e domain with glycine-beta receptor peptide
Deposited on 2014-04-17, released 2014-08-27
The last revision was dated 2020-01-08, with a file datestamp of 2020-01-03.
Experiment type: XRAY
Resolution: 1.98 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: gephyrin
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Gphn, Gph
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Glycine receptor subunit beta
    Species: RATTUS NORVEGICUS, synthetic [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GOL, ACT, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4pd1A (A:)
mspfpltsmdkafitvlemtpvlgteiinyrdgmgrvlaqdvyakdnlppfpasvkdgya
vraadgpgdrfiigesqageqptqtvmpgqvmrvttgapipcgadavvqvedteliresd
dgteelevrilvqarpgqdirpighdikrgecvlakgthmgpseigllatvgvtevevnk
fpvvavmstgnellnpeddllpgkirdsnrstllatiqehgyptinlgivgdnpddllna
lnegisradviitsggvsmgekdylkqvldidlhaqihfgrvfmkpglpttfatldidgv
rkiifalpgnpvsavvtcnlfvvpalrkmqgildprptiikarlscdvkldprpeyhrci
ltwhhqeplpwaqstgnqmssrlmsmrsangllmlppkteqyvelhkgevvdvmvigrl

    Sequence, based on observed residues (ATOM records):
    >4pd1A (A:)
fpltsmdkafitvlemtpvlgteiinyrdgmgrvlaqdvyakdnlppfpasvkdgyavra
adgpgdrfiigesqageqptqtvmpgqvmrvttgapipcgadavvqvedteliresddgt
eelevrilvqarpgqdirpighdikrgecvlakgthmgpseigllatvgvtevevnkfpv
vavmstgnellnpeddllpgkirdsnrstllatiqehgyptinlgivgdnpddllnalne
gisradviitsggdylkqvldidlhaqihfgrvfmkpglpttfatldidgvrkiifalpg
npvsavvtcnlfvvpalrkmqgildprptiikarlscdvkldprpeyhrciltwhhqepl
pwaqstsrlmsmrsangllmlppkteqyvelhkgevvdvmvigl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4pd1C (C:)
dfsivgslprdfels

    Sequence, based on observed residues (ATOM records):
    >4pd1C (C:)
dfsivgslpr