PDB entry 4pct

View 4pct on RCSB PDB site
Description: Crystal structure of a bacterial fucosidase with iminocyclitol (2S,3S,4R,5S)-3,4-dihydroxy-2-ethynyl-5-methylpyrrolidine
Deposited on 2014-04-16, released 2014-07-02
The last revision was dated 2015-02-11, with a file datestamp of 2015-02-06.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.209
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: alpha-l-fucosidase
    Species: Bacteroides thetaiotaomicron [TaxId:226186]
    Gene: BT_2970
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: alpha-l-fucosidase
    Species: Bacteroides thetaiotaomicron [TaxId:226186]
    Gene: BT_2970
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: alpha-l-fucosidase
    Species: Bacteroides thetaiotaomicron [TaxId:226186]
    Gene: BT_2970
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: alpha-l-fucosidase
    Species: Bacteroides thetaiotaomicron [TaxId:226186]
    Gene: BT_2970
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SO4, IMD, H76, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4pctA (A:)
eiplkygatnegkrqdpamqkfrdnrlgafihwglyaipggewngkvyggaaewlkswak
vpadewlklmdqwnptkfdakkwakmakemgtkyvkittkhhegfclwpskytkytvant
pykrdilgelvkayndegidvhfyfsvmdwsnpdyrydikskedsiafsrfleftdnqlk
elatryptvkdfwfdgtwdasvkkngwwtahaeqmlkelvpgvainsrlraddkgkrhfd
sngrlmgdyesgyerrlpdpvkdlkvtqwdweacmtipenqwgyhkdwslsyvktpievi
drivhavsmggnmvvnfgpqadgdfrpeekamataigkwmnrygkavyacdyagfekqdw
gyytrgkndevymvvfnqpyserlivktpkgitvekatllttgeditvvettrneynvsv
pkknpgepyviqlkvraak

    Sequence, based on observed residues (ATOM records):
    >4pctA (A:)
eiplkygatnegkrqdpamqkfrdnrlgafihwglyaipggewngkvyggaaewlkswak
vpadewlklmdqwnptkfdakkwakmakemgtkyvkittkhhegfclwpskytkytvant
pykrdilgelvkayndegidvhfyfsvmdwsnpdyrydikskedsiafsrfleftdnqlk
elatryptvkdfwfdgtwdasvkkngwwtahaeqmlkelvpgvainsrlraddkgkrhfd
sngrlmgdyesgyerrlpdpvkdlkvtqwdweacmtipenqwgyhkdwslsyvktpievi
drivhavsmggnmvvnfgpqadgdfrpeekamataigkwmnrygkavyacdyagfekqdw
gyytrgkndevymvvfnqpyserlivktpkgitvekatllttgeditvvettrneynvsv
pkknpgepyviqlkvraa

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >4pctB (B:)
eiplkygatnegkrqdpamqkfrdnrlgafihwglyaipggewngkvyggaaewlkswak
vpadewlklmdqwnptkfdakkwakmakemgtkyvkittkhhegfclwpskytkytvant
pykrdilgelvkayndegidvhfyfsvmdwsnpdyrydikskedsiafsrfleftdnqlk
elatryptvkdfwfdgtwdasvkkngwwtahaeqmlkelvpgvainsrlraddkgkrhfd
sngrlmgdyesgyerrlpdpvkdlkvtqwdweacmtipenqwgyhkdwslsyvktpievi
drivhavsmggnmvvnfgpqadgdfrpeekamataigkwmnrygkavyacdyagfekqdw
gyytrgkndevymvvfnqpyserlivktpkgitvekatllttgeditvvettrneynvsv
pkknpgepyviqlkvraak

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4pctC (C:)
eiplkygatnegkrqdpamqkfrdnrlgafihwglyaipggewngkvyggaaewlkswak
vpadewlklmdqwnptkfdakkwakmakemgtkyvkittkhhegfclwpskytkytvant
pykrdilgelvkayndegidvhfyfsvmdwsnpdyrydikskedsiafsrfleftdnqlk
elatryptvkdfwfdgtwdasvkkngwwtahaeqmlkelvpgvainsrlraddkgkrhfd
sngrlmgdyesgyerrlpdpvkdlkvtqwdweacmtipenqwgyhkdwslsyvktpievi
drivhavsmggnmvvnfgpqadgdfrpeekamataigkwmnrygkavyacdyagfekqdw
gyytrgkndevymvvfnqpyserlivktpkgitvekatllttgeditvvettrneynvsv
pkknpgepyviqlkvraak

    Sequence, based on observed residues (ATOM records):
    >4pctC (C:)
eiplkygatnegkrqdpamqkfrdnrlgafihwglyaipggewngkvyggaaewlkswak
vpadewlklmdqwnptkfdakkwakmakemgtkyvkittkhhegfclwpskytkytvant
pykrdilgelvkayndegidvhfyfsvmdwsnpdyrydikskedsiafsrfleftdnqlk
elatryptvkdfwfdgtwdasvkkngwwtahaeqmlkelvpgvainsrlraddkgkrhfd
sngrlmgdyesgyerrlpdpvkdlkvtqwdweacmtipenqwgyhkdwslsyvktpievi
drivhavsmggnmvvnfgpqadgdfrpeekamataigkwmnrygkavyacdyagfekqdw
gyytrgkndevymvvfnqpyserlivktpkgitvekatllttgeditvvettrneynvsv
pkknpgepyviqlkvraa

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4pctD (D:)
eiplkygatnegkrqdpamqkfrdnrlgafihwglyaipggewngkvyggaaewlkswak
vpadewlklmdqwnptkfdakkwakmakemgtkyvkittkhhegfclwpskytkytvant
pykrdilgelvkayndegidvhfyfsvmdwsnpdyrydikskedsiafsrfleftdnqlk
elatryptvkdfwfdgtwdasvkkngwwtahaeqmlkelvpgvainsrlraddkgkrhfd
sngrlmgdyesgyerrlpdpvkdlkvtqwdweacmtipenqwgyhkdwslsyvktpievi
drivhavsmggnmvvnfgpqadgdfrpeekamataigkwmnrygkavyacdyagfekqdw
gyytrgkndevymvvfnqpyserlivktpkgitvekatllttgeditvvettrneynvsv
pkknpgepyviqlkvraak

    Sequence, based on observed residues (ATOM records):
    >4pctD (D:)
eiplkygatnegkrqdpamqkfrdnrlgafihwglyaipggewngkvyggaaewlkswak
vpadewlklmdqwnptkfdakkwakmakemgtkyvkittkhhegfclwpskytkytvant
pykrdilgelvkayndegidvhfyfsvmdwsnpdyrydikskedsiafsrfleftdnqlk
elatryptvkdfwfdgtwdasvkkngwwtahaeqmlkelvpgvainsrlraddkgkrhfd
sngrlmgdyesgyerrlpdpvkdlkvtqwdweacmtipenqwgyhkdwslsyvktpievi
drivhavsmggnmvvnfgpqadgdfrpeekamataigkwmnrygkavyacdyagfekqdw
gyytrgkndevymvvfnqpyserlivktpkgitvekatllttgeditvvettrneynvsv
pkknpgepyviqlkvra