PDB entry 4paf

View 4paf on RCSB PDB site
Description: crystal structure of a trap periplasmic solute binding protein from ruegeria pomeroyi dss-3 (spo1773, target efi-510260) with bound 3,4-dihydroxybenzoate
Class: solute-binding protein
Keywords: TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, EFI, Structural Genomics, SOLUTE-BINDING PROTEIN
Deposited on 2014-04-08, released 2014-05-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-25, with a file datestamp of 2019-12-20.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: TRAP dicarboxylate transporter, DctP subunit, putative
    Species: Ruegeria pomeroyi [TaxId:246200]
    Gene: SPO1773
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5LSJ5 (Start-326)
      • engineered mutation (36)
      • engineered mutation (219)
      • expression tag (327-333)
    Domains in SCOPe 2.08: d4pafa1, d4pafa2
  • Heterogens: DHB, MLI, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4pafA (A:)
mtisfkglargvacaalvlaalpaaakefrlglitpsphtwtkaaeafgaelseksggah
svsvfparqlgneaqmlqqlqtgaldmafmtvaevsnrvpnmgafyapylagdinhaaai
lrsdtargmlavlpqeagvvgvgfgsagmrqilsrgavnsaadlsglklritpfdpildf
ynalgaaptpmplpavydalangqvdaidmdvelinvlkchehadtilisnhmmfpmvgl
isarvyagmsdadkamiselmakhvdstldvymvkepewtdaltkvgktfkrvdqsffgd
aiaqwetiwadkapslpelrktaadlqaenlyfq

    Sequence, based on observed residues (ATOM records): (download) 
    >4pafA (A:)
kefrlglitpsphtwtkaaeafgaelseksggahsvsvfparqlgneaqmlqqlqtgald
mafmtvaevsnrvpnmgafyapylagdinhaaailrsdtargmlavlpqeagvvgvgfgs
agmrqilsrgavnsaadlsglklritpfdpildfynalgaaptpmplpavydalangqvd
aidmdvelinvlkchehadtilisnhmmfpmvglisarvyagmsdadkamiselmakhvd
stldvymvkepewtdaltkvgktfkrvdqsffgdaiaqwetiwadkapslpelrktaadl
qaenlyfq