PDB entry 4p9s

View 4p9s on RCSB PDB site
Description: crystal structure of the mature form of rat dmgdh
Deposited on 2014-04-04, released 2014-06-18
The last revision was dated 2019-12-25, with a file datestamp of 2019-12-20.
Experiment type: XRAY
Resolution: 2.32 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dimethylglycine dehydrogenase
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Dmgdh
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Dimethylglycine dehydrogenase
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Dmgdh
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FAD, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4p9sA (A:)
massaglregqesppsppewkdraetviigggcvgvslayhlakagmrdvvllekselta
gstwhaaglttyfhpginlkkihydsiklyerleeetgqvvgfhqpgsirlattpervde
fkyqmtrtnwhateqyiiepekihelfpllnmdkilaglynpgdghidpysltmalatga
rkygallkypapvtslkprpdgtwdvetpqgsvranrivnaagfwarevgkmigldhpli
pvqhqyvitstipevkalkrelpvlrdlegsyylrqerdgllfgpyesqekmklqaswva
hgvppgfgkelfesdldritehveaamemvpvlkkadiinivngpityspdilpmvgphq
gvrnywvaigfgygiihaggvgtylsdwilhgeppfdlieldpnrygkwtttqyteakar
esygfnnivgypkeerfagrptqrvsglykileskcsmgfhagweqphwfykpgqdtqyr
psfrrtnwfepvgseykqvmqrvgvidlspfgkfnikgqdstqlldhlcanvipkvgftn
ishmltprgrvyaeltvshqspgefllitgsgselhdlrwieeaavrggydveirnitde
lgvlgvagpyarrvlqkltsedlsddvfkflqtkslkisdipvtairisytgelgwelyh
rredsaalyerimnagqeegidnfgtyalnalrlekafrawgsemncdtnpleagldyfi
klnkpanftgkqalkqikakglkrrlvcltlatdnvdpegnesvwykgkvignttsgsys
ysiqkslafayvpvelsevgqqvevellgknypatiiqeplvlteptrtrlqkdgrksaa
lehhhhhh

    Sequence, based on observed residues (ATOM records):
    >4p9sA (A:)
ewkdraetviigggcvgvslayhlakagmrdvvllekseltagstwhaaglttyfhpgin
lkkihydsiklyerleeetgqvvgfhqpgsirlattpervdefkyqmtrtnwhateqyii
epekihelfpllnmdkilaglynpgdghidpysltmalatgarkygallkypapvtslkp
rpdgtwdvetpqgsvranrivnaagfwarevgkmigldhplipvqhqyvitstipevkal
krelpvlrdlegsyylrqerdgllfgpyesqekmklqaswvahgvppgfgkelfesdldr
itehveaamemvpvlkkadiinivngpityspdilpmvgphqgvrnywvaigfgygiiha
ggvgtylsdwilhgeppfdlieldpnrygkwtttqyteakaresygfnnivgypkeerfa
grptqrvsglykileskcsmgfhagweqphwfykpgqdtqyrpsfrrtnwfepvgseykq
vmqrvgvidlspfgkfnikgqdstqlldhlcanvipkvgftnishmltprgrvyaeltvs
hqspgefllitgsgselhdlrwieeaavrggydveirnitdelgvlgvagpyarrvlqkl
tsedlsddvfkflqtkslkisdipvtairisytgelgwelyhrredsaalyerimnagqe
egidnfgtyalnalrlekafrawgsemncdtnpleagldyfiklnkpanftgkqalkqik
akglkrrlvcltlatdnvdpegnesvwykgkvignttsgsysysiqkslafayvpvelse
vgqqvevellgknypatiiqeplvlteptrtrlqkd

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4p9sB (B:)
massaglregqesppsppewkdraetviigggcvgvslayhlakagmrdvvllekselta
gstwhaaglttyfhpginlkkihydsiklyerleeetgqvvgfhqpgsirlattpervde
fkyqmtrtnwhateqyiiepekihelfpllnmdkilaglynpgdghidpysltmalatga
rkygallkypapvtslkprpdgtwdvetpqgsvranrivnaagfwarevgkmigldhpli
pvqhqyvitstipevkalkrelpvlrdlegsyylrqerdgllfgpyesqekmklqaswva
hgvppgfgkelfesdldritehveaamemvpvlkkadiinivngpityspdilpmvgphq
gvrnywvaigfgygiihaggvgtylsdwilhgeppfdlieldpnrygkwtttqyteakar
esygfnnivgypkeerfagrptqrvsglykileskcsmgfhagweqphwfykpgqdtqyr
psfrrtnwfepvgseykqvmqrvgvidlspfgkfnikgqdstqlldhlcanvipkvgftn
ishmltprgrvyaeltvshqspgefllitgsgselhdlrwieeaavrggydveirnitde
lgvlgvagpyarrvlqkltsedlsddvfkflqtkslkisdipvtairisytgelgwelyh
rredsaalyerimnagqeegidnfgtyalnalrlekafrawgsemncdtnpleagldyfi
klnkpanftgkqalkqikakglkrrlvcltlatdnvdpegnesvwykgkvignttsgsys
ysiqkslafayvpvelsevgqqvevellgknypatiiqeplvlteptrtrlqkdgrksaa
lehhhhhh

    Sequence, based on observed residues (ATOM records):
    >4p9sB (B:)
ewkdraetviigggcvgvslayhlakagmrdvvllekseltagstwhaaglttyfhpgin
lkkihydsiklyerleeetgqvvgfhqpgsirlattpervdefkyqmtrtnwhateqyii
epekihelfpllnmdkilaglynpgdghidpysltmalatgarkygallkypapvtslkp
rpdgtwdvetpqgsvranrivnaagfwarevgkmigldhplipvqhqyvitstipevkal
krelpvlrdlegsyylrqerdgllfgpyesqekmklqaswvahgvppgfgkelfesdldr
itehveaamemvpvlkkadiinivngpityspdilpmvgphqgvrnywvaigfgygiiha
ggvgtylsdwilhgeppfdlieldpnrygkwtttqyteakaresygfnnivgypkeerfa
grptqrvsglykileskcsmgfhagweqphwfykpgqdtqyrpsfrrtnwfepvgseykq
vmqrvgvidlspfgkfnikgqdstqlldhlcanvipkvgftnishmltprgrvyaeltvs
hqspgefllitgsgselhdlrwieeaavrggydveirnitdelgvlgvagpyarrvlqkl
tsedlsddvfkflqtkslkisdipvtairisytgelgwelyhrredsaalyerimnagqe
egidnfgtyalnalrlekafrawgsemncdtnpleagldyfiklnkpanftgkqalkqik
akglkrrlvcltlatdnvdpegnesvwykgkvignttsgsysysiqkslafayvpvelse
vgqqvevellgknypatiiqeplvlteptrtrlqkd