PDB entry 4p8e

View 4p8e on RCSB PDB site
Description: Structure of ribB complexed with substrate (Ru5P) and metal ions
Class: lyase
Keywords: ribB, riboflvain, ligand, complex, crystal, Ru5P, Zn, LYASE
Deposited on 2014-03-31, released 2015-03-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-22, with a file datestamp of 2017-11-17.
Experiment type: XRAY
Resolution: 2.04 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 3,4-dihydroxy-2-butanone 4-phosphate synthase
    Species: Vibrio cholerae serotype O1 [TaxId:243277]
    Gene: ribB, VC_A1060
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4p8ea_
  • Chain 'B':
    Compound: 3,4-dihydroxy-2-butanone 4-phosphate synthase
    Species: Vibrio cholerae serotype O1 [TaxId:243277]
    Gene: ribB, VC_A1060
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KKP2 (19-End)
      • expression tag (17-18)
    Domains in SCOPe 2.08: d4p8eb1, d4p8eb2
  • Heterogens: 5RP, ZN, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4p8eA (A:)
mgshhhhhhssglvprgshmnqssllaefgdpitrvenalqalregrgvlllddedrene
gdiiyaveslttaqmalmirecsgivclclteaqadrlalppmvvnnnsanqtaftvsie
akhgvttgvsaqdrvttiktaanpqakpedlarpghvfplraraggvlarrghtegtvdl
mqmaglqpagvlceltnpdgsmaktpeiiefgklhnmpvltiedmvqyriqfdlkla

    Sequence, based on observed residues (ATOM records): (download) 
    >4p8eA (A:)
nqssllaefgdpitrvenalqalregrgvlllddedrenegdiiyaveslttaqmalmir
ecsgivclclteaqadrlalppmvvnnnsanqtaftvsieakhgvttgvsaqdrvttikt
aanpqakpedlarpghvfplraraggvlarrghtegtvdlmqmaglqpagvlceltnpdg
smaktpeiiefgklhnmpvltiedmvqyriqfdlkl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4p8eB (B:)
mgshhhhhhssglvprgshmnqssllaefgdpitrvenalqalregrgvlllddedrene
gdiiyaveslttaqmalmirecsgivclclteaqadrlalppmvvnnnsanqtaftvsie
akhgvttgvsaqdrvttiktaanpqakpedlarpghvfplraraggvlarrghtegtvdl
mqmaglqpagvlceltnpdgsmaktpeiiefgklhnmpvltiedmvqyriqfdlkla

    Sequence, based on observed residues (ATOM records): (download) 
    >4p8eB (B:)
shmnqssllaefgdpitrvenalqalregrgvlllddedrenegdiiyaveslttaqmal
mirecsgivclclteaqadrlalppmvvnnnsanqtaftvsieakhgvttgvsaqdrvtt
iktaanpqakpedlarpghvfplraraggvlarrghtegtvdlmqmaglqpagvlceltn
pdgsmaktpeiiefgklhnmpvltiedmvqyriqfdl