PDB entry 4p46

View 4p46 on RCSB PDB site
Description: J809.B5 Y31A TCR bound to IAb3K
Class: immune system
Keywords: TCR MHCII, immune system
Deposited on 2014-03-11, released 2014-05-28
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-02-04, with a file datestamp of 2015-01-30.
Experiment type: XRAY
Resolution: 2.85 Å
R-factor: 0.185
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: J809.B5 TCR Y31A alpha chain (Va2.8)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 4P46 (0-198)
    Domains in SCOPe 2.06: d4p46a1, d4p46a2
  • Chain 'B':
    Compound: J809.B5 TCR beta chain (Vb8.2)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 4P46 (0-237)
    Domains in SCOPe 2.06: d4p46b1, d4p46b2
  • Chain 'C':
    Compound: H-2 class II histocompatibility antigen, A-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-Aa
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4p46c1, d4p46c2
  • Chain 'D':
    Compound: 3K Peptide,H-2 class II histocompatibility antigen, A beta chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-Ab1, H2-iabeta
    Database cross-references and differences (RAF-indexed):
    • PDB 4P46 (0-12)
    • Uniprot P14483 (Start-217)
    Domains in SCOPe 2.06: d4p46d1, d4p46d2

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >4p46A (A:)
    qvrqspqsltvwegetailncsyensafdafpwyqqfpgegpalliairsvsdkkedgrf
    tiffnkrekklslhitdsqpgdsatyfcaaskgadrltfgkgtqliiqpyiqnpdpavyq
    lrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnksdf
    acanafnnsiipedtffps
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >4p46B (B:)
    avtqsprnkvavtggkvtlscnqtnnhnnmywyrqdtghglrlihysygagstekgdipd
    gykasrpsqenfslilelatpsqtsvyfcasgdfwgdtlyfgagtrlsvledlknvfppe
    vavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpaln
    dsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgr
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >4p46C (C:)
    ieadhvgtygisvyqspgdigqytfefdgdelfyvdldkketvwmlpefgqlasfdpqgg
    lqniavvkhnlgvltkrsnstpatneapqatvfpkspvllgqpntlicfvdnifppvini
    twlrnsksvadgvyetsffvnrdysfhklsyltfipsdddiydckvehwgleepvlkhw
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4p46D (D:)
    feaqkakankavdggggslvprgsggggserhfvyqfmgecyftngtqriryvtryiynr
    eeyvrydsdvgehravtelgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrr
    leqpnvvislsrtealnhhntlvcsvtdfypakikvrwfrngqeetvgvsstqlirngdw
    tfqvlvmlemtprrgevytchvehpslkspitvewraq
    

    Sequence, based on observed residues (ATOM records): (download)
    >4p46D (D:)
    feaqkakankavdhfvyqfmgecyftngtqriryvtryiynreeyvrydsdvgehravte
    lgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrrleqpnvvislsrtealnh
    hntlvcsvtdfypakikvrwfrngqeetvgvsstqlirngdwtfqvlvmlemtprrgevy
    tchvehpslkspitvewraq