PDB entry 4p3i

View 4p3i on RCSB PDB site
Description: Structure of the P domain from a GI.7 Norovirus variant in complex with LeA HBGA.
Class: viral protein
Keywords: P domain, Capsid protein, Norovirus, HBGA, LeA, Lewis HBGA, nonsecretor, VIRAL PROTEIN
Deposited on 2014-03-07, released 2014-04-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-08-05, with a file datestamp of 2020-07-31.
Experiment type: XRAY
Resolution: 1.69 Å
R-factor: N/A
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: P domain of VP1
    Species: Norovirus Hu/GI.7/TCH-060/USA/2003 [TaxId:1097017]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4p3ia_
  • Chain 'B':
    Compound: P domain of VP1
    Species: Norovirus Hu/GI.7/TCH-060/USA/2003 [TaxId:1097017]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4p3ib_
  • Chain 'C':
    Compound: P domain of VP1
    Species: Norovirus Hu/GI.7/TCH-060/USA/2003 [TaxId:1097017]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4p3ic_
  • Chain 'D':
    Compound: P domain of VP1
    Species: Norovirus Hu/GI.7/TCH-060/USA/2003 [TaxId:1097017]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4p3id_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4p3iA (A:)
eqktrqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsa
sqvarirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdqnls
gdpmsrldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygs
tvtesthlappifppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrge
aallhyvdpdthrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpv
g

    Sequence, based on observed residues (ATOM records): (download) 
    >4p3iA (A:)
qltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsasqvar
irgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdnlsgdpmsr
ldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygesthlap
pifppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrgeaallhyvdpd
thrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4p3iB (B:)
eqktrqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsa
sqvarirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdqnls
gdpmsrldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygs
tvtesthlappifppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrge
aallhyvdpdthrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpv
g

    Sequence, based on observed residues (ATOM records): (download) 
    >4p3iB (B:)
ltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsasqvari
rgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvlsgdpmsrldv
kqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsyghlappifppg
fgeaivyfmsdfpivstaqvpctlpqefvshfveqqapvrgeaallhyvdpdthrnlgef
klypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4p3iC (C:)
eqktrqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsa
sqvarirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdqnls
gdpmsrldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygs
tvtesthlappifppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrge
aallhyvdpdthrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpv
g

    Sequence, based on observed residues (ATOM records): (download) 
    >4p3iC (C:)
ltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsasqvari
rgkvfstasgkglnlteldgtpyhaspaplgfpdigacdwhvstfkvdqnlsgdpmsrld
vkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsythlappifpp
gfgeaivyfmsdfpivaqvpctlpqefvshfveqqapvrgeaallhyvdpdthrnlgefk
lypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpvg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4p3iD (D:)
eqktrqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsa
sqvarirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdqnls
gdpmsrldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygs
tvtesthlappifppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrge
aallhyvdpdthrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpv
g

    Sequence, based on observed residues (ATOM records): (download) 
    >4p3iD (D:)
ltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsasqvari
rgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdlsgdpmsrld
vkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygstvtesthl
appifppgfgeaivyfmsdfpivsqvpctlpqefvshfveqqapvrgeaallhyvdpdth
rnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpvg