PDB entry 4p2n

View 4p2n on RCSB PDB site
Description: Structure of the P domain from a GI.7 Norovirus variant in complex with LeX HBGA
Class: viral protein
Keywords: P domain, Capsid protein, Norovirus, HBGA, LeY, Lewis HBGA, nonsecretor, VIRAL PROTEIN
Deposited on 2014-03-04, released 2014-04-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-09.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major capsid protein
    Species: Norovirus Hu/GI.7/TCH-060/USA/2003 [TaxId:1097017]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4p2na_
  • Chain 'B':
    Compound: Major capsid protein
    Species: Norovirus Hu/GI.7/TCH-060/USA/2003 [TaxId:1097017]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4p2nb_
  • Chain 'C':
    Compound: Major capsid protein
    Species: Norovirus Hu/GI.7/TCH-060/USA/2003 [TaxId:1097017]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4p2nc_
  • Chain 'D':
    Compound: Major capsid protein
    Species: Norovirus Hu/GI.7/TCH-060/USA/2003 [TaxId:1097017]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4p2nd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4p2nA (A:)
eqktrqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsa
sqvarirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdqnls
gdpmsrldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygs
tvtesthlappifppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrge
aallhyvdpdthrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpv
g

    Sequence, based on observed residues (ATOM records): (download) 
    >4p2nA (A:)
qltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsasqvar
irgkvfstasgkglnlteldgtpyhaspaplgfpdigacdwhvstfkvdqnlsgdpmsrl
dvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsyhlappifpp
gfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrgeaallhyvdpdthrnl
gefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4p2nB (B:)
eqktrqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsa
sqvarirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdqnls
gdpmsrldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygs
tvtesthlappifppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrge
aallhyvdpdthrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpv
g

    Sequence, based on observed residues (ATOM records): (download) 
    >4p2nB (B:)
ltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsasqvari
rgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdqlsgdpmsrl
dvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygsttesthl
appifppgfgeaivyfmsdfpivsaqvpctlpqefvshfveqqapvrgeaallhyvdpdt
hrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4p2nC (C:)
eqktrqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsa
sqvarirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdqnls
gdpmsrldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygs
tvtesthlappifppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrge
aallhyvdpdthrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpv
g

    Sequence, based on observed residues (ATOM records): (download) 
    >4p2nC (C:)
ltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsasqvari
rgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvlsgdpmsrldv
kqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygstvtesthla
ppifppgfgeaivyfmsdfpivsaqvpctlpqefvshfveqqapvrgeaallhyvdpdth
rnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4p2nD (D:)
eqktrqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsa
sqvarirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdqnls
gdpmsrldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygs
tvtesthlappifppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrge
aallhyvdpdthrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpv
g

    Sequence, based on observed residues (ATOM records): (download) 
    >4p2nD (D:)
rqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsasqva
rirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvsgdpmsrld
vkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsythlappifpp
gfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrgeaallhyvdpdthrnl
gefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpvg