PDB entry 4p26

View 4p26 on RCSB PDB site
Description: Structure of the P domain from a GI.7 Norovirus variant in complex with A-type 2 HBGA
Class: viral protein
Keywords: P domain, Capsid protein, Norovirus, HBGA, A type 2, Type 2 HBGA, Secretor, VIRAL PROTEIN
Deposited on 2014-03-01, released 2014-04-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-08-05, with a file datestamp of 2020-07-31.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: P domain of VP1
    Species: Norovirus Hu/GI.7/TCH-060/USA/2003 [TaxId:1097017]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4p26a_
  • Chain 'B':
    Compound: P domain of VP1
    Species: Norovirus Hu/GI.7/TCH-060/USA/2003 [TaxId:1097017]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4p26b_
  • Chain 'C':
    Compound: P domain of VP1
    Species: Norovirus Hu/GI.7/TCH-060/USA/2003 [TaxId:1097017]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4p26c_
  • Chain 'D':
    Compound: P domain of VP1
    Species: Norovirus Hu/GI.7/TCH-060/USA/2003 [TaxId:1097017]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4p26d_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4p26A (A:)
eqktrqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsa
sqvarirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdqnls
gdpmsrldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygs
tvtesthlappifppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrge
aallhyvdpdthrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpv
g

    Sequence, based on observed residues (ATOM records): (download) 
    >4p26A (A:)
rqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsasqva
rirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvnlsgdpmsr
ldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygsesthla
ppifppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrgeaallhyvdp
dthrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpvg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4p26B (B:)
eqktrqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsa
sqvarirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdqnls
gdpmsrldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygs
tvtesthlappifppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrge
aallhyvdpdthrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpv
g

    Sequence, based on observed residues (ATOM records): (download) 
    >4p26B (B:)
ltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsasqvari
rgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdnlsgdpmsrl
dvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygshlappif
ppgfgeaivyfmsdfpivsgqvpctlpqefvshfveqqapvrgeaallhyvdpdthrnlg
efklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpvg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4p26C (C:)
eqktrqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsa
sqvarirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdqnls
gdpmsrldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygs
tvtesthlappifppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrge
aallhyvdpdthrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpv
g

    Sequence, based on observed residues (ATOM records): (download) 
    >4p26C (C:)
qltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsasqvar
irgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvsgdpmsrldv
kqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygstvtesthla
ppifppgfgeaivyfmsdfpivsaqvpctlpqefvshfveqqapvrgeaallhyvdpdth
rnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpvg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4p26D (D:)
eqktrqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsa
sqvarirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdqnls
gdpmsrldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygs
tvtesthlappifppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrge
aallhyvdpdthrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpv
g

    Sequence, based on observed residues (ATOM records): (download) 
    >4p26D (D:)
qltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsasqvar
irgkvfstasgkglnlteldgtpyhaspaplgfpdigacdwhvstfkvdqnlsgdpmsrl
dvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygshlappif
ppgfgeaivyfmsdfpivsqvpctlpqefvshfveqqapvrgeaallhyvdpdthrnlge
fklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpvg