PDB entry 4p25

View 4p25 on RCSB PDB site
Description: Structure of the P domain from a GI.7 Norovirus variant in complex with LeY HBGA.
Class: viral protein
Keywords: P domain, Capsid protein, Norovirus, HBGA, LeY, Lewis HBGA, VIRAL PROTEIN
Deposited on 2014-03-01, released 2014-04-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-09.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: N/A
AEROSPACI score: 0.57 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major capsid protein
    Species: Norovirus Hu/GI.7/TCH-060/USA/2003 [TaxId:1097017]
    Database cross-references and differences (RAF-indexed):
    • Uniprot G8FL04 (Start-300)
      • expression tag (301)
    Domains in SCOPe 2.08: d4p25a1, d4p25a2
  • Chain 'B':
    Compound: Major capsid protein
    Species: Norovirus Hu/GI.7/TCH-060/USA/2003 [TaxId:1097017]
    Database cross-references and differences (RAF-indexed):
    • Uniprot G8FL04 (Start-300)
      • expression tag (301)
    Domains in SCOPe 2.08: d4p25b1, d4p25b2
  • Chain 'C':
    Compound: Major capsid protein
    Species: Norovirus Hu/GI.7/TCH-060/USA/2003 [TaxId:1097017]
    Database cross-references and differences (RAF-indexed):
    • Uniprot G8FL04 (Start-300)
      • expression tag (301)
    Domains in SCOPe 2.08: d4p25c1, d4p25c2
  • Chain 'D':
    Compound: Major capsid protein
    Species: Norovirus Hu/GI.7/TCH-060/USA/2003 [TaxId:1097017]
    Database cross-references and differences (RAF-indexed):
    • Uniprot G8FL04 (1-300)
      • expression tag (0)
      • expression tag (301)
    Domains in SCOPe 2.08: d4p25d1, d4p25d2, d4p25d3
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4p25A (A:)
aeqktrqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvs
asqvarirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdqnl
sgdpmsrldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsyg
stvtesthlappifppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrg
eaallhyvdpdthrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkp
vg

    Sequence, based on observed residues (ATOM records): (download) 
    >4p25A (A:)
ltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsasqvari
rgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvlsgdpmsrldv
kqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygstvtthlapp
ifppgfgeaivyfmsdfpivsgaqvpctlpqefvshfveqqapvrgeaallhyvdpdthr
nlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpvg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4p25B (B:)
aeqktrqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvs
asqvarirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdqnl
sgdpmsrldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsyg
stvtesthlappifppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrg
eaallhyvdpdthrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkp
vg

    Sequence, based on observed residues (ATOM records): (download) 
    >4p25B (B:)
rqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsasqva
rirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdgdpmsrld
vkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygsthlappif
ppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrgeaallhyvdpdthr
nlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpvg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4p25C (C:)
aeqktrqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvs
asqvarirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdqnl
sgdpmsrldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsyg
stvtesthlappifppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrg
eaallhyvdpdthrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkp
vg

    Sequence, based on observed residues (ATOM records): (download) 
    >4p25C (C:)
ltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsasqvari
rgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdlsgdpmsrld
vkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygstvtesthl
appifppgfgeaivyfmsdfpivqvpctlpqefvshfveqqapvrgeaallhyvdpdthr
nlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpvg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4p25D (D:)
aeqktrqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvs
asqvarirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdqnl
sgdpmsrldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsyg
stvtesthlappifppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrg
eaallhyvdpdthrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkp
vg

    Sequence, based on observed residues (ATOM records): (download) 
    >4p25D (D:)
aeqktrqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvs
asqvarirgkvfstasgkglnlteldgtpyhaespaplgfpdigacdwhvstfkvsgdpm
srldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygthlap
pifppfgeaivyfmsdfpivsntaqvpctlpqefvshfveqqapvrgeaallhyvdpdth
rnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpvg