PDB entry 4oyf

View 4oyf on RCSB PDB site
Description: crystal structure of gltph r397a in sodium-bound state
Deposited on 2014-02-11, released 2014-08-13
The last revision was dated 2015-01-07, with a file datestamp of 2015-01-02.
Experiment type: XRAY
Resolution: 3.41 Å
R-factor: 0.285
AEROSPACI score: 0.05 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glutamate symport protein
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed):
    • PDB 4OYF
  • Chain 'B':
    Compound: glutamate symport protein
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed):
    • PDB 4OYF
  • Chain 'C':
    Compound: glutamate symport protein
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed):
    • PDB 4OYF
  • Chain 'D':
    Compound: glutamate symport protein
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed):
    • PDB 4OYF
  • Chain 'E':
    Compound: glutamate symport protein
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed):
    • PDB 4OYF
  • Chain 'F':
    Compound: glutamate symport protein
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed):
    • PDB 4OYF
  • Heterogens: NA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4oyfA (A:)
mglyrkyieypvlqkiliglilgaivglilghygyahavhtyvkpfgdlfvrllkmlvmp
ivfaslvvgaasisparlgrvgvkivvyylltsafavtlgiimarlfnpgagihlavggq
qfqphqapplvhilldivptnpfgalangqvlptiffaiilgiaitylmnsenekvrksa
etlldainglaeamykivngvmqyapigvfaliayvmaeqgvhvvgelakvtaavyvglt
lqillvyfvllkiygidpisfikhakdamltafvtrsssgtlpvtmrvakemgisegiys
ftlplgatinmdgtalyqgvctffianalgshltvgqqltivltavlasigtagvpgaga
imlamvlhsvglpltdpnvaaayamilgidaildmgrtmvnvtgdltgtaivaktegtlv
pr

    Sequence, based on observed residues (ATOM records):
    >4oyfA (A:)
eypvlqkiliglilgaivglilghygyahavhtyvkpfgdlfvrllkmlvmpivfaslvv
gaasisparlgrvgvkivvyylltsafavtlgiimarlfnpgagihlavggqlvhilldi
vptnpfgalangqvlptiffaiilgiaitylmnsenekvrksaetlldainglaeamyki
vngvmqyapigvfaliayvmaeqgvhvvgelakvtaavyvgltlqillvyfvllkiygid
pisfikhakdamltafvtrsssgtlpvtmrvakemgisegiysftlplgatinmdgtaly
qgvctffianalgshltvgqqltivltavlasigtagvpgagaimlamvlhsvglpltdp
nvaaayamilgidaildmgrtmvnvtgdltgtaivakte

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4oyfB (B:)
mglyrkyieypvlqkiliglilgaivglilghygyahavhtyvkpfgdlfvrllkmlvmp
ivfaslvvgaasisparlgrvgvkivvyylltsafavtlgiimarlfnpgagihlavggq
qfqphqapplvhilldivptnpfgalangqvlptiffaiilgiaitylmnsenekvrksa
etlldainglaeamykivngvmqyapigvfaliayvmaeqgvhvvgelakvtaavyvglt
lqillvyfvllkiygidpisfikhakdamltafvtrsssgtlpvtmrvakemgisegiys
ftlplgatinmdgtalyqgvctffianalgshltvgqqltivltavlasigtagvpgaga
imlamvlhsvglpltdpnvaaayamilgidaildmgrtmvnvtgdltgtaivaktegtlv
pr

    Sequence, based on observed residues (ATOM records):
    >4oyfB (B:)
eypvlqkiliglilgaivglilghygyahavhtyvkpfgdlfvrllkmlvmpivfaslvv
gaasisparlgrvgvkivvyylltsafavtlgiimarlfnpgagihlavggqlvhilldi
vptnpfgalangqvlptiffaiilgiaitylmnsenekvrksaetlldainglaeamyki
vngvmqyapigvfaliayvmaeqgvhvvgelakvtaavyvgltlqillvyfvllkiygid
pisfikhakdamltafvtrsssgtlpvtmrvakemgisegiysftlplgatinmdgtaly
qgvctffianalgshltvgqqltivltavlasigtagvpgagaimlamvlhsvglpltdp
nvaaayamilgidaildmgrtmvnvtgdltgtaivakte

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4oyfC (C:)
mglyrkyieypvlqkiliglilgaivglilghygyahavhtyvkpfgdlfvrllkmlvmp
ivfaslvvgaasisparlgrvgvkivvyylltsafavtlgiimarlfnpgagihlavggq
qfqphqapplvhilldivptnpfgalangqvlptiffaiilgiaitylmnsenekvrksa
etlldainglaeamykivngvmqyapigvfaliayvmaeqgvhvvgelakvtaavyvglt
lqillvyfvllkiygidpisfikhakdamltafvtrsssgtlpvtmrvakemgisegiys
ftlplgatinmdgtalyqgvctffianalgshltvgqqltivltavlasigtagvpgaga
imlamvlhsvglpltdpnvaaayamilgidaildmgrtmvnvtgdltgtaivaktegtlv
pr

    Sequence, based on observed residues (ATOM records):
    >4oyfC (C:)
eypvlqkiliglilgaivglilghygyahavhtyvkpfgdlfvrllkmlvmpivfaslvv
gaasisparlgrvgvkivvyylltsafavtlgiimarlfnpgagihlavggqlvhilldi
vptnpfgalangqvlptiffaiilgiaitylmnsenekvrksaetlldainglaeamyki
vngvmqyapigvfaliayvmaeqgvhvvgelakvtaavyvgltlqillvyfvllkiygid
pisfikhakdamltafvtrsssgtlpvtmrvakemgisegiysftlplgatinmdgtaly
qgvctffianalgshltvgqqltivltavlasigtagvpgagaimlamvlhsvglpltdp
nvaaayamilgidaildmgrtmvnvtgdltgtaivakte

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4oyfD (D:)
mglyrkyieypvlqkiliglilgaivglilghygyahavhtyvkpfgdlfvrllkmlvmp
ivfaslvvgaasisparlgrvgvkivvyylltsafavtlgiimarlfnpgagihlavggq
qfqphqapplvhilldivptnpfgalangqvlptiffaiilgiaitylmnsenekvrksa
etlldainglaeamykivngvmqyapigvfaliayvmaeqgvhvvgelakvtaavyvglt
lqillvyfvllkiygidpisfikhakdamltafvtrsssgtlpvtmrvakemgisegiys
ftlplgatinmdgtalyqgvctffianalgshltvgqqltivltavlasigtagvpgaga
imlamvlhsvglpltdpnvaaayamilgidaildmgrtmvnvtgdltgtaivaktegtlv
pr

    Sequence, based on observed residues (ATOM records):
    >4oyfD (D:)
eypvlqkiliglilgaivglilghygyahavhtyvkpfgdlfvrllkmlvmpivfaslvv
gaasisparlgrvgvkivvyylltsafavtlgiimarlfnpgagihlavggqlvhilldi
vptnpfgalangqvlptiffaiilgiaitylmnsenekvrksaetlldainglaeamyki
vngvmqyapigvfaliayvmaeqgvhvvgelakvtaavyvgltlqillvyfvllkiygid
pisfikhakdamltafvtrsssgtlpvtmrvakemgisegiysftlplgatinmdgtaly
qgvctffianalgshltvgqqltivltavlasigtagvpgagaimlamvlhsvglpltdp
nvaaayamilgidaildmgrtmvnvtgdltgtaivakte

  • Chain 'E':
    Sequence, based on SEQRES records:
    >4oyfE (E:)
mglyrkyieypvlqkiliglilgaivglilghygyahavhtyvkpfgdlfvrllkmlvmp
ivfaslvvgaasisparlgrvgvkivvyylltsafavtlgiimarlfnpgagihlavggq
qfqphqapplvhilldivptnpfgalangqvlptiffaiilgiaitylmnsenekvrksa
etlldainglaeamykivngvmqyapigvfaliayvmaeqgvhvvgelakvtaavyvglt
lqillvyfvllkiygidpisfikhakdamltafvtrsssgtlpvtmrvakemgisegiys
ftlplgatinmdgtalyqgvctffianalgshltvgqqltivltavlasigtagvpgaga
imlamvlhsvglpltdpnvaaayamilgidaildmgrtmvnvtgdltgtaivaktegtlv
pr

    Sequence, based on observed residues (ATOM records):
    >4oyfE (E:)
eypvlqkiliglilgaivglilghygyahavhtyvkpfgdlfvrllkmlvmpivfaslvv
gaasisparlgrvgvkivvyylltsafavtlgiimarlfnpgagihlavggqlvhilldi
vptnpfgalangqvlptiffaiilgiaitylmnsenekvrksaetlldainglaeamyki
vngvmqyapigvfaliayvmaeqgvhvvgelakvtaavyvgltlqillvyfvllkiygid
pisfikhakdamltafvtrsssgtlpvtmrvakemgisegiysftlplgatinmdgtaly
qgvctffianalgshltvgqqltivltavlasigtagvpgagaimlamvlhsvglpltdp
nvaaayamilgidaildmgrtmvnvtgdltgtaivakte

  • Chain 'F':
    Sequence, based on SEQRES records:
    >4oyfF (F:)
mglyrkyieypvlqkiliglilgaivglilghygyahavhtyvkpfgdlfvrllkmlvmp
ivfaslvvgaasisparlgrvgvkivvyylltsafavtlgiimarlfnpgagihlavggq
qfqphqapplvhilldivptnpfgalangqvlptiffaiilgiaitylmnsenekvrksa
etlldainglaeamykivngvmqyapigvfaliayvmaeqgvhvvgelakvtaavyvglt
lqillvyfvllkiygidpisfikhakdamltafvtrsssgtlpvtmrvakemgisegiys
ftlplgatinmdgtalyqgvctffianalgshltvgqqltivltavlasigtagvpgaga
imlamvlhsvglpltdpnvaaayamilgidaildmgrtmvnvtgdltgtaivaktegtlv
pr

    Sequence, based on observed residues (ATOM records):
    >4oyfF (F:)
eypvlqkiliglilgaivglilghygyahavhtyvkpfgdlfvrllkmlvmpivfaslvv
gaasisparlgrvgvkivvyylltsafavtlgiimarlfnpgagihlavggqlvhilldi
vptnpfgalangqvlptiffaiilgiaitylmnsenekvrksaetlldainglaeamyki
vngvmqyapigvfaliayvmaeqgvhvvgelakvtaavyvgltlqillvyfvllkiygid
pisfikhakdamltafvtrsssgtlpvtmrvakemgisegiysftlplgatinmdgtaly
qgvctffianalgshltvgqqltivltavlasigtagvpgagaimlamvlhsvglpltdp
nvaaayamilgidaildmgrtmvnvtgdltgtaivakte