PDB entry 4owk

View 4owk on RCSB PDB site
Description: crystal structure of the vibrio vulnificus hemolysin/cytolysin beta- trefoil lectin with n-acetyl-d-galactosamine bound
Deposited on 2014-02-02, released 2014-05-28
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cytolysin
    Species: Vibrio vulnificus [TaxId:216895]
    Gene: VV2_0404,vvhA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19247 (4-End)
      • expression tag (3)
  • Chain 'B':
    Compound: Cytolysin
    Species: Vibrio vulnificus [TaxId:216895]
    Gene: VV2_0404,vvhA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19247 (4-End)
      • expression tag (3)
  • Chain 'C':
    Compound: Cytolysin
    Species: Vibrio vulnificus [TaxId:216895]
    Gene: VV2_0404,vvhA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19247 (4-End)
      • expression tag (3)
  • Chain 'D':
    Compound: Cytolysin
    Species: Vibrio vulnificus [TaxId:216895]
    Gene: VV2_0404,vvhA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19247 (4-End)
      • expression tag (3)
  • Chain 'E':
    Compound: Cytolysin
    Species: Vibrio vulnificus [TaxId:216895]
    Gene: VV2_0404,vvhA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19247 (4-137)
      • expression tag (2-3)
  • Chain 'F':
    Compound: Cytolysin
    Species: Vibrio vulnificus [TaxId:216895]
    Gene: VV2_0404,vvhA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19247 (4-End)
      • expression tag (2-3)
  • Chain 'G':
    Compound: Cytolysin
    Species: Vibrio vulnificus [TaxId:216895]
    Gene: VV2_0404,vvhA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19247 (4-End)
      • expression tag (3)
  • Heterogens: NGA, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >4owkA (A:)
gsamahvtlqslsnndlcldvygengdktvaggsvngwschgswnqvwgldkeeryrsrv
asdrcltvnadktltveqcganlaqkwywegdklisryvdgnntryllnivggrnvqvtp
eneanqarwkptlqqvkl

    Sequence, based on observed residues (ATOM records):
    >4owkA (A:)
mahvtlqslsnndlcldvygengdktvaggsvngwschgswnqvwgldkeeryrsrvasd
rcltvnadktltveqcganlaqkwywegdklisryvdgnntryllnivggrnvqvtpene
anqarwkptlq

  • Chain 'B':
    Sequence, based on SEQRES records:
    >4owkB (B:)
gsamahvtlqslsnndlcldvygengdktvaggsvngwschgswnqvwgldkeeryrsrv
asdrcltvnadktltveqcganlaqkwywegdklisryvdgnntryllnivggrnvqvtp
eneanqarwkptlqqvkl

    Sequence, based on observed residues (ATOM records):
    >4owkB (B:)
mahvtlqslsnndlcldvygengdktvaggsvngwschgswnqvwgldkeeryrsrvasd
rcltvnadktltveqcganlaqkwywegdklisryvdgnntryllnivggrnvqvtpene
anqarwkptlq

  • Chain 'C':
    Sequence, based on SEQRES records:
    >4owkC (C:)
gsamahvtlqslsnndlcldvygengdktvaggsvngwschgswnqvwgldkeeryrsrv
asdrcltvnadktltveqcganlaqkwywegdklisryvdgnntryllnivggrnvqvtp
eneanqarwkptlqqvkl

    Sequence, based on observed residues (ATOM records):
    >4owkC (C:)
mahvtlqslsnndlcldvygengdktvaggsvngwschgswnqvwgldkeeryrsrvasd
rcltvnadktltveqcganlaqkwywegdklisryvdgnntryllnivggrnvqvtpene
anqarwkptlq

  • Chain 'D':
    Sequence, based on SEQRES records:
    >4owkD (D:)
gsamahvtlqslsnndlcldvygengdktvaggsvngwschgswnqvwgldkeeryrsrv
asdrcltvnadktltveqcganlaqkwywegdklisryvdgnntryllnivggrnvqvtp
eneanqarwkptlqqvkl

    Sequence, based on observed residues (ATOM records):
    >4owkD (D:)
mahvtlqslsnndlcldvygengdktvaggsvngwschgswnqvwgldkeeryrsrvasd
rcltvnadktltveqcganlaqkwywegdklisryvdgnntryllnivggrnvqvtpene
anqarwkptlq

  • Chain 'E':
    Sequence, based on SEQRES records:
    >4owkE (E:)
gsamahvtlqslsnndlcldvygengdktvaggsvngwschgswnqvwgldkeeryrsrv
asdrcltvnadktltveqcganlaqkwywegdklisryvdgnntryllnivggrnvqvtp
eneanqarwkptlqqvkl

    Sequence, based on observed residues (ATOM records):
    >4owkE (E:)
amahvtlqslsnndlcldvygengdktvaggsvngwschgswnqvwgldkeeryrsrvas
drcltvnadktltveqcganlaqkwywegdklisryvdgnntryllnivggrnvqvtpen
eanqarwkptlqqvkl

  • Chain 'F':
    Sequence, based on SEQRES records:
    >4owkF (F:)
gsamahvtlqslsnndlcldvygengdktvaggsvngwschgswnqvwgldkeeryrsrv
asdrcltvnadktltveqcganlaqkwywegdklisryvdgnntryllnivggrnvqvtp
eneanqarwkptlqqvkl

    Sequence, based on observed residues (ATOM records):
    >4owkF (F:)
amahvtlqslsnndlcldvygengdktvaggsvngwschgswnqvwgldkeeryrsrvas
drcltvnadktltveqcganlaqkwywegdklisryvdgnntryllnivggrnvqvtpen
eanqarwkptlqq

  • Chain 'G':
    Sequence, based on SEQRES records:
    >4owkG (G:)
gsamahvtlqslsnndlcldvygengdktvaggsvngwschgswnqvwgldkeeryrsrv
asdrcltvnadktltveqcganlaqkwywegdklisryvdgnntryllnivggrnvqvtp
eneanqarwkptlqqvkl

    Sequence, based on observed residues (ATOM records):
    >4owkG (G:)
mahvtlqslsnndlcldvygengdktvaggsvngwschgswnqvwgldkeeryrsrvasd
rcltvnadktltveqcganlaqkwywegdklisryvdgnntryllnivggrnvqvtpene
anqarwkptlq