PDB entry 4ot8

View 4ot8 on RCSB PDB site
Description: X-ray Crystal Structure of Serine Hydroxymethyl Transferase from Burkholderia cenocepacia bound to PLP and Serine
Class: transferase
Keywords: Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Seattle Structural Genomics Center for Infectious Disease, SSGCID, serine hydroxymethyl transferase, transferase
Deposited on 2014-02-13, released 2014-04-23
The last revision prior to the SCOPe 2.07 freeze date was dated 2014-04-23, with a file datestamp of 2014-04-18.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.168
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: serine hydroxymethyltransferase
    Species: BURKHOLDERIA CENOCEPACIA [TaxId:216591]
    Gene: glyA, BCAL3197
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ot8a_
  • Chain 'B':
    Compound: serine hydroxymethyltransferase
    Species: BURKHOLDERIA CENOCEPACIA [TaxId:216591]
    Gene: glyA, BCAL3197
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ot8b_
  • Chain 'C':
    Compound: serine hydroxymethyltransferase
    Species: BURKHOLDERIA CENOCEPACIA [TaxId:216591]
    Gene: glyA, BCAL3197
    Database cross-references and differences (RAF-indexed):
    • Uniprot B4ECY9 (8-End)
      • expression tag (7)
    Domains in SCOPe 2.07: d4ot8c1, d4ot8c2
  • Chain 'D':
    Compound: serine hydroxymethyltransferase
    Species: BURKHOLDERIA CENOCEPACIA [TaxId:216591]
    Gene: glyA, BCAL3197
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ot8d_
  • Heterogens: PLP, SER, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4ot8A (A:)
    mahhhhhhmfdraqstianvdpeifaaieqenrrqedhieliasenytspavmaaqgsql
    tnkyaegypgkryyggceyvdvveqlaidrvkqlfgaeaanvqpnsgsqanqgvffamlk
    pgdtimgmslahgghlthgspvnmsgkwfnvvsyglnenedidydaaeklanehkpkliv
    agasafalkidferlakiaksvgaylmvdmahyagliaagvypnpvphadfvtttthksl
    rgprggvilmkaeyekpinsaifpgiqggplmhviaakavafkealspefkeyqqkvven
    arvlaetlvkrglrivsgrteshvmlvdlrakhitgkaaeaalgaahitvnknaipndpe
    kpfvtsgirlgspamttrgfgpaeaeqvgnliadvlenpedaatiervraqvaeltkrfp
    vyr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ot8A (A:)
    fdraqstianvdpeifaaieqenrrqedhieliasenytspavmaaqgsqltnkyaegyp
    gkryyggceyvdvveqlaidrvkqlfgaeaanvqpnsgsqanqgvffamlkpgdtimgms
    lahgghlthgspvnmsgkwfnvvsyglnenedidydaaeklanehkpklivagasafalk
    idferlakiaksvgaylmvdmahyagliaagvypnpvphadfvtttthkslrgprggvil
    mkaeyekpinsaifpgiqggplmhviaakavafkealspefkeyqqkvvenarvlaetlv
    krglrivsgrteshvmlvdlrakhitgkaaeaalgaahitvnknaipndpekpfvtsgir
    lgspamttrgfgpaeaeqvgnliadvlenpedaatiervraqvaeltkrfpvyr
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4ot8B (B:)
    mahhhhhhmfdraqstianvdpeifaaieqenrrqedhieliasenytspavmaaqgsql
    tnkyaegypgkryyggceyvdvveqlaidrvkqlfgaeaanvqpnsgsqanqgvffamlk
    pgdtimgmslahgghlthgspvnmsgkwfnvvsyglnenedidydaaeklanehkpkliv
    agasafalkidferlakiaksvgaylmvdmahyagliaagvypnpvphadfvtttthksl
    rgprggvilmkaeyekpinsaifpgiqggplmhviaakavafkealspefkeyqqkvven
    arvlaetlvkrglrivsgrteshvmlvdlrakhitgkaaeaalgaahitvnknaipndpe
    kpfvtsgirlgspamttrgfgpaeaeqvgnliadvlenpedaatiervraqvaeltkrfp
    vyr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ot8B (B:)
    aqstianvdpeifaaieqenrrqedhieliasenytspavmaaqgsqltnkyaegypgkr
    yyggceyvdvveqlaidrvkqlfgaeaanvqpnsgsqanqgvffamlkpgdtimgmslah
    gghlthgspvnmsgkwfnvvsyglnenedidydaaeklanehkpklivagasafalkidf
    erlakiaksvgaylmvdmahyagliaagvypnpvphadfvtttthkslrgprggvilmka
    eyekpinsaifpgiqggplmhviaakavafkealspefkeyqqkvvenarvlaetlvkrg
    lrivsgrteshvmlvdlrakhitgkaaeaalgaahitvnknaipndpekpfvtsgirlgs
    pamttrgfgpaeaeqvgnliadvlenpedaatiervraqvaeltkrfpvyr
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4ot8C (C:)
    mahhhhhhmfdraqstianvdpeifaaieqenrrqedhieliasenytspavmaaqgsql
    tnkyaegypgkryyggceyvdvveqlaidrvkqlfgaeaanvqpnsgsqanqgvffamlk
    pgdtimgmslahgghlthgspvnmsgkwfnvvsyglnenedidydaaeklanehkpkliv
    agasafalkidferlakiaksvgaylmvdmahyagliaagvypnpvphadfvtttthksl
    rgprggvilmkaeyekpinsaifpgiqggplmhviaakavafkealspefkeyqqkvven
    arvlaetlvkrglrivsgrteshvmlvdlrakhitgkaaeaalgaahitvnknaipndpe
    kpfvtsgirlgspamttrgfgpaeaeqvgnliadvlenpedaatiervraqvaeltkrfp
    vyr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ot8C (C:)
    hmfdraqstianvdpeifaaieqenrrqedhieliasenytspavmaaqgsqltnkyaeg
    ypgkryyggceyvdvveqlaidrvkqlfgaeaanvqpnsgsqanqgvffamlkpgdtimg
    mslahgghlthgspvnmsgkwfnvvsyglnenedidydaaeklanehkpklivagasafa
    lkidferlakiaksvgaylmvdmahyagliaagvypnpvphadfvtttthkslrgprggv
    ilmkaeyekpinsaifpgiqggplmhviaakavafkealspefkeyqqkvvenarvlaet
    lvkrglrivsgrteshvmlvdlrakhitgkaaeaalgaahitvnknaipndpekpfvtsg
    irlgspamttrgfgpaeaeqvgnliadvlenpedaatiervraqvaeltkrfpvy
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4ot8D (D:)
    mahhhhhhmfdraqstianvdpeifaaieqenrrqedhieliasenytspavmaaqgsql
    tnkyaegypgkryyggceyvdvveqlaidrvkqlfgaeaanvqpnsgsqanqgvffamlk
    pgdtimgmslahgghlthgspvnmsgkwfnvvsyglnenedidydaaeklanehkpkliv
    agasafalkidferlakiaksvgaylmvdmahyagliaagvypnpvphadfvtttthksl
    rgprggvilmkaeyekpinsaifpgiqggplmhviaakavafkealspefkeyqqkvven
    arvlaetlvkrglrivsgrteshvmlvdlrakhitgkaaeaalgaahitvnknaipndpe
    kpfvtsgirlgspamttrgfgpaeaeqvgnliadvlenpedaatiervraqvaeltkrfp
    vyr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ot8D (D:)
    stianvdpeifaaieqenrrqedhieliasenytspavmaaqgsqltnkyaegypgkryy
    ggceyvdvveqlaidrvkqlfgaeaanvqpnsgsqanqgvffamlkpgdtimgmslahgg
    hlthgspvnmsgkwfnvvsyglnenedidydaaeklanehkpklivagasafalkidfer
    lakiaksvgaylmvdmahyagliaagvypnpvphadfvtttthkslrgprggvilmkaey
    ekpinsaifpgiqggplmhviaakavafkealspefkeyqqkvvenarvlaetlvkrglr
    ivsgrteshvmlvdlrakhitgkaaeaalgaahitvnknaipndpekpfvtsgirlgspa
    mttrgfgpaeaeqvgnliadvlenpedaatiervraqvaeltkrfpvy